[galaxy-user] UCSC error

2013-06-21 Thread YBao
Hi all, When I was trying to visualize MACS peaking calling results using UCSC browser, I encountered this error message: *Warning/Error(s):* - Error line 14252 of https://main.g2.bx.psu.edu/root/display_as?id=11074175display_app=ucscauthz_method=display_at: chromStart after chromEnd

[galaxy-user] List of genomes

2013-04-29 Thread YBao
Hi All, I was trying to map a set of data to a genome, Klebsiella pneumoniae subsp. Pneumoniae MGH 78578(31). While uploading the reads, I was able to find the reference genome as listed above. However, when I tried to map the data using wither bowtie or BWA, the pull down list did not include

Re: [galaxy-user] question on cufflinks output

2011-06-27 Thread YBao
Hi galaxy-users When trying to display a set of chip microarray data in UCSC main, , we encounter this error: Error(s): Error line 38879 of http://main.g2.bx.psu.edu/root/display_as?id=3221463display_app=ucscauthz_method=display_at: chromEnd larger than chrom chr21_random size (1679928 1679693)