Re: [galaxy-user] Attempting to use parallelism in BWA

2012-07-20 Thread Dannon Baker
Hi Kevin, I'm not able to reproduce this with python 2.7. Can you confirm that galaxy is indeed using the installed python 2.7 and not, perhaps, 2.4? The structure of python's try/except/finally clause changed with python 2.5 and if you were unintentionally running 2.4 that would explain this

Re: [galaxy-user] Attempting to use parallelism in BWA

2012-07-17 Thread Scott McManus
Hi Kevin- That's truly odd. The error happens when the offending file is imported, which means that it is a syntax issue that should have been seen earlier. I'll take a look at this soon (unless someone else beats me to it). In the meantime, of course, do not use the use_tasked_jobs on this

[galaxy-user] Attempting to use parallelism in BWA

2012-07-17 Thread Kevin C. Dorff
Hi, I am using Python 2.7. I am running with an hg checked out, up to date version of "https://bitbucket.org/galaxy/galaxy-dist/";. I am very new to Galaxy. I have an instance setup *and running* locally. I am able to perform routine actions such as uploading files, processing with Picard, and al