Hello all, Below is an announcement that went out to the larger GMOD community about GMOD related content at Plant and Animal Genome in a week.
Some particular highlights for the Galaxy Community are * Dan Blankenberg's hour long seminar on Galaxy on Wednesday, * Anne-Francoise Adam-Blondon's talk on the GnpIS portal * and the INRA posters on using Galaxy for SNP detection (#188) and using Galaxy in the GnpIS portal (#805). See http://gmod.org/wiki/PAG_2011 for details and links. Also, if you are presenting work that uses Galaxy at PAG (or any other conference), please feel free to post that to the list as well. Thanks, Dave C ---------- Forwarded message ---------- From: Dave Clements <cleme...@nescent.org> Date: Sat, Jan 8, 2011 at 9:32 PM Subject: [Gmod-announce] GMOD at PAG 2011, Jan 15-19 To: GMOD Announcements List <gmod-annou...@lists.sourceforge.net>, GMOD Comparative Genomics and Phylogeny List <gmod-coge...@lists.sourceforge.net> Hello all, GMOD will have a stronger presence then ever at the Plant and Animal Genome Conference (PAG 2011) <http://gmod.org/wiki/PAG_2011>, being held January 15-19 in San Diego. This includes, for the first time, *an all day GMOD Workshop <http://www.intl-pag.org/19/19-gmod.html>* on Wednesday, January 19th, featuring extended talks on - MAKER <http://gmod.org/wiki/MAKER>: An easy to use genome annotation pipeline <http://www.intl-pag.org/19/19-gmod.html#MAKER> - Galaxy <http://gmod.org/wiki/Galaxy>: Analyze, Visualize, Communicate<http://www.intl-pag.org/19/19-gmod.html#Galaxy> - JBrowse <http://gmod.org/wiki/JBrowse>: A Next Generation Genome Browser <http://www.intl-pag.org/19/19-gmod.html#JBrowse> - Tripal <http://gmod.org/wiki/Tripal>: A Construction Toolkit for Online Genomic Databases <http://www.intl-pag.org/19/19-gmod.html#Tripal> - GMODviews <http://gmod.org/wiki/GMODviews>: A web-based knowledge-base and user-configurable interface for GMOD databases and tools, including Tripal, GBrowse, and Chado DBs<http://www.intl-pag.org/19/19-gmod.html#GMODviews> - GBrowse_syn <http://gmod.org/wiki/GBrowse_syn>: The Generic Synteny Browser <http://www.intl-pag.org/19/19-gmod.html#GBrowse_syn> PAG 2011 <http://gmod.org/wiki/PAG_2011> will also feature workshops and tutorials covering - BioMart <http://gmod.org/wiki/BioMart>: Ensembl and Ensembl Genomes<http://www.intl-pag.org/19/abstracts/W29_PAGXIX_188.html> - GBrowse <http://gmod.org/wiki/GBrowse>: The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse<http://www.intl-pag.org/19/19-gbrowse.html> - CMap <http://gmod.org/wiki/CMap>: Using Gramene: A Genomics and Genetics Resource for Rice and other Grasses<http://www.intl-pag.org/19/19-gramene.html> Plus *at least 25 more talks<http://gmod.org/wiki/PAG_2011#Projects_Using_GMOD_Components>and posters <http://gmod.org/wiki/PAG_2011#Posters>* about or using Pathway Tools <http://www.intl-pag.org/19/abstracts/C02_PAGXIX_903.html>, GBrowse<http://www.intl-pag.org/19/abstracts/P08b_PAGXIX_828.html>, Galaxy <http://gmod.org/wiki/Galaxy>, CMap <http://gmod.org/wiki/Cmap>, Apollo <http://gmod.org/wiki/Apollo>, Chado <http://gmod.org/wiki/Chado>, GBrowse_syn <http://gmod.org/wiki/GBrowse_syn>, JBrowse<http://gmod.org/wiki/JBrowse>, BioMart <http://gmod.org/wiki/BioMart>, MAKER <http://gmod.org/wiki/MAKER>, Tripal <http://gmod.org/wiki/Tripal>, and the GMOD Evo Hackathon<http://www.intl-pag.org/19/abstracts/P08a_PAGXIX_814.html>. See http://gmod.org/wiki/PAG_2011 for a more complete list. Many GMOD users<http://gmod.org/wiki/PAG_2011#Projects_Using_GMOD_Components>and GMOD developers, including Stephen Ficklin <http://gmod.org/wiki/User:Sficklin> (Tripal<http://gmod.org/wiki/Tripal>), Carson Holt <http://gmod.org/wiki/User:Carsonholt> (MAKER<http://gmod.org/wiki/MAKER>), Barry Moore <http://gmod.org/wiki/User:Bmoore> (SOBA<http://gmod.org/wiki/SOBA>, MAKER <http://gmod.org/wiki/MAKER>), Dan Blankenberg<http://gmod.org/wiki/User:DanB>( Galaxy <http://gmod.org/wiki/Galaxy>), Mitch Skinner<http://gmod.org/wiki/User:MitchSkinner>( JBrowse <http://gmod.org/wiki/JBrowse>), Ken Youens-Clark (CMap<http://gmod.org/wiki/CMap>), Mike Caudy <http://gmod.org/wiki/User:Mcaudy> (GMODviews<http://gmod.org/wiki/GMODviews>), Rob Buels <http://gmod.org/wiki/User:RobertBuels> (Bio::Chado::Schema<http://gmod.org/wiki/Bio::Chado::Schema>, GBrowse_syn <http://gmod.org/wiki/GBrowse_syn>), and Scott Cain<http://gmod.org/wiki/User:Scott>( Chado <http://gmod.org/wiki/Chado>, GBrowse <http://gmod.org/wiki/GBrowse>, ...) will be attending PAG this year. Please seek each other out. Dave Clements <http://gmod.org/wiki/User:Clements> Galaxy Project <http://gmod.org/wiki/Galaxy> PS: In addition, three of the GMOD developers (Dan, Mitch, Scott) are also available to visit organizations in the San Diego area<http://gmod.org/wiki/GMOD_News#GMOD_Roadshow_in_San_Diego>during the meeting. -- http://gmod.org/wiki/GMOD_Americas_2011 http://gmod.org/wiki/GMOD_News http://usegalaxy.org/ ------------------------------------------------------------------------------ Gaining the trust of online customers is vital for the success of any company that requires sensitive data to be transmitted over the Web. 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