On Thu, Feb 9, 2012 at 9:57 PM, Jennifer Jackson j...@bx.psu.edu wrote:
Hi Peter,
It looks to me like there are versions both, with the Tool Shed version
having the more recent date stamp. But if those extra functions are not
needed, then yes, you are correct, the version included in the
David,
I think we should go with Peter's advice. I had seen a date of April
2011 in the distribution for the tools I examined, but he knows these
tools very well, and I could have easily missed the July 2011 date.
Loading from the Tool Shed is not difficult, but perhaps unnecessary.
So, for
David,
I think we should go with Peter's advice. I had seen a date of April
2011 in the distribution for the tools I examined, but he knows these
tools very well, and I could have easily missed the July 2011 date.
Loading from the Tool Shed is not difficult, but perhaps unnecessary.
So, for
Hi, Everybody,
I uploaded two complete genome sequences and hope to BLAST homologs from
both genome.
Does anybody know how to do BLAST search on galaxy?
Thanks
David
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The Galaxy User list should be used for the discussion of
Galaxy
Hi David,
at first you need to predict some genes. In the tool-shed you will find
some gene prediction tools. With these gene you can search against local
BLAST-databases using the NCBI BLAST+ tools, included in Main-Galaxy.
Hope that helps,
Bjoern
Hi, Everybody,
I uploaded two complete
Hi David,
It sounds like you are using the public Galaxy server at
http://usegalaxy.org (http://main.g2.bx.psu.edu)? A BLAST service is not
available on the public instance. (Megablast is available, but for NGS
query data versus a specific set of target native genomes).
Bjoern is correct
On Thursday, February 9, 2012, Jennifer Jackson j...@bx.psu.edu wrote:
Hi David,
It sounds like you are using the public Galaxy server at
http://usegalaxy.org (http://main.g2.bx.psu.edu)? A
BLAST service is not available on the public instance.
(Megablast is available, but for NGS query data
Hi Peter,
It looks to me like there are versions both, with the Tool Shed version
having the more recent date stamp. But if those extra functions are not
needed, then yes, you are correct, the version included in the
distribution would be enough.
Please send corrections if I have any of
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