Re: [galaxy-user] Megablast question

Hi Vasu, The three primary megablast databases available on the public main Galaxy instance are comprised of individual fragments/sequences of different types from many species (not assembled genomes): http://user.list.galaxyproject.org/Question-about-megablast-td4543260.html If you want to u

[galaxy-user] Megablast question

Hi, I am using megablast and was wondering how can I get chromosome number and coordinates of its hits. Thanks Shamesher ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at

Re: [galaxy-user] Megablast question

Noa has the right idea, but if you're asking for how to split a dataset into two non-overlapping halves you'll want to use "Select First" and "Select Last", instead of random lines. Get an accurate line count from your file using the "Line/Word/Character count" tool and then split it right in t

Re: [galaxy-user] Megablast question

Hi Scott I  never used megablast so what i am writing is true of just any fasta file (so if there is anything quirky in megablast that i dont know about, apologies!): Take your fasta file and convert to tabular (under "fasta manipulation" - this will ma

[galaxy-user] Megablast question

Hi all When using Galaxy megablast, is there a simple way to reduce my FASTA files from 23 million reads to 1/2 that size and submit to megablast separately? Thanks -- Scott Tighe Advanced Genome Technology Lab Vermont Cancer Center at the University of Vermont 149 Beaumont Avenue Health Sci