Re: [galaxy-user] Permission denied error when running fastqc

2012-07-08 Thread Aarti Desai
Hello Luciano, The problem is resolved by using the chmod command below. Thanks a lot. Aarti From: Luciano Cosme [mailto:cosme.sim...@gmail.com] Sent: Friday, July 06, 2012 9:58 PM To: Aarti Desai Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Permission denied error when running

Re: [galaxy-user] Permission denied error when running fastqc

2012-07-06 Thread Aarti Desai
Thanks. Will try that and get back. Sent from Samsung mobile Luciano Cosme wrote: Hi, You will have to change the permission of fastqc to be executable. You can open your terminal, log as root and change it. Open your terminal, type sudo su, then it will ask your password. After you ente

Re: [galaxy-user] Permission denied error when running fastqc

2012-07-06 Thread Aarti Desai
Thanks a lot. I will try that. Aarti Sent from Samsung mobile Luciano Cosme wrote: Hi, You will have to change the permission of fastqc to be executable. You can open your terminal, log as root and change it. Open your terminal, type sudo su, then it will ask your password. After you ent

Re: [galaxy-user] Permission denied error when running fastqc

2012-07-06 Thread Luciano Cosme
Hi, You will have to change the permission of fastqc to be executable. You can open your terminal, log as root and change it. Open your terminal, type sudo su, then it will ask your password. After you enter your password type chmod 777 /root/Programs/Galaxy/galaxy-dist/tool-data/shared/jars/Fas

[galaxy-user] Permission denied error when running fastqc

2012-07-06 Thread Aarti Desai
Hello All, One more problem when running analysis on local galaxy install. I am trying to run fastqc on a fastq file I just imported. I have fastqc in ~/Programs/Galaxy/galaxy-dist/tool-data/shared/jars/FastQC I am getting the following error ## odpath=None: No output found in None. Output f