[galaxy-user] What is the quality score type for the Solid datasets downloaded from SRA of NCBI?

2013-03-05 Thread Gene Genome
Hi all, Please help with the quality score type for the downloaded Solid datasets. I downloaded RNA-seq datasets, which were generated by AB Solid system, as base space and at FastQ format from SRA of NCBI. I uploaded the datasets onto the online sever Galaxy and change the datatype directly into

Re: [galaxy-user] What is the quality score type for the Solid datasets downloaded from SRA of NCBI?

2013-03-05 Thread Jennifer Jackson
Hello Jianguang, The tool NGS: QC and manipulation - FASTQ Groomer has some information about this, including a link to a wikipedia entry with more details specifically about the SRA: http://en.wikipedia.org/wiki/FASTQ_format