Subject: Re: [galaxy-user] annotation file for cufflinks
I had a similar question, after i downloaded a bacterial ref genome GFF file
and loaded it into Galaxy, the use reference annotation feature of Cufflinks
kept telling it need to be the GTF file instead,
When I check the Cufflinks manual at http
I had a similar question, after i downloaded a bacterial ref genome
GFF file and loaded it into Galaxy, the use reference annotation
feature of Cufflinks kept telling it need to be the GTF file instead,
When I check the Cufflinks manual at http://cufflinks.cbcb.umd.edu/manual.html
It looks
Hi jen and galaxy users, when I try to use cufflinks in GALAXY and select use
reference annotation, I am NOT sure how to get the annotation file in GTF
format for cufflinks.
I was trying to down-load the annotation file from Illumina donated package in
Cufflink website, I am NOT sure this is
If using Ensembl make sure it is properly formatted.
Vasu
--- On Tue, 8/30/11, Peng, Tao tp...@fhcrc.org wrote:
From: Peng, Tao tp...@fhcrc.org
Subject: [galaxy-user] annotation file for cufflinks
To: Jennifer Jackson j...@bx.psu.edu, galaxy-user
galaxy-user@lists.bx.psu.edu
Date: Tuesday
UCSC should work fine.
Vasu
--- On Tue, 8/30/11, Peng, Tao tp...@fhcrc.org wrote:
From: Peng, Tao tp...@fhcrc.org
Subject: RE: [galaxy-user] annotation file for cufflinks
To: vasu punj pu...@yahoo.com, Jennifer Jackson j...@bx.psu.edu,
galaxy-user galaxy-user@lists.bx.psu.edu
Date: Tuesday
, 8/30/11, Peng, Tao tp...@fhcrc.org wrote:
From: Peng, Tao tp...@fhcrc.org
Subject: [galaxy-user] annotation file for cufflinks
To: Jennifer Jackson j...@bx.psu.edu, galaxy-user
galaxy-user@lists.bx.psu.edu
Date: Tuesday, August 30, 2011, 1:52 PM
Hi jen and galaxy users, when I try
; Peng, Tao
Subject: Re: [galaxy-user] annotation file for cufflinks
If using Ensembl make sure it is properly formatted.
Vasu
--- On Tue, 8/30/11, Peng, Tao tp...@fhcrc.org wrote:
From: Peng, Tao tp...@fhcrc.org
Subject: [galaxy-user] annotation file for cufflinks
To: Jennifer Jackson j
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