[galaxy-user] clipping from 5' end

Hi all, Does anyone know if it is possible to trim/clip a sequence from the 5' end? Thank you. Best, Soetkin. Soetkin Versteyhe, PhD PostDoc University of Copenhagen Faculty of Health Sciences The Novo Nordisk Foundation Center for Basic Metabolic Research Integrative Physiology Blegdamsvej

Re: [galaxy-user] clipping from 5' end

Hello Soetkin, A tools search using the keyword trim will bring up the options in Galaxy, the simplest being the FASTX-toolkit Trim function. To enable searching, use the the Options menu in the top left tool menu panel. Thanks for using Galaxy! Jen Galaxy team

Re: [galaxy-user] clipping from 5' end

Hi, with regard to the 5' clipping: On the main (usegalaxy.org) server: it is possible using the NGS: QC and manipulation = Generic FASTQ Manipulation = FASTQ Quality Trimmer by sliding window. If you are interested, we have recently adapted that tool a bit to improve speed (5'+3' clipping