Hello William,
The tools in NGS: QC and manipulation, especially those in the
sub-section AB-SOLiD data can do the manipulations needed before
mapping. It may be helpful to view the screencast at
http://usegalaxy.org, center pane, quickie #9.
Hopefully this helps to get you started,
Best,
I am trying to use bowtie to assign reads to the s. Cerevisiae genome. I
have data from paired end SOLiD sequencing with two unique six base pair
barcodes. Can I use bowtie to make csfasta and qual files from my mixed
original data split by bar code? I know I can use the trim option to remove
2 matches
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