Read group info isn't included in the Cuffdiff output right now. I've created a
Trello card to fix this oversight: https://trello.com/c/FdUYdbIn
Best,
J.
On Feb 18, 2013, at 12:32 PM, Johanna Sandgren wrote:
Hi,
I am running cufflinks and cuffdiff using Galaxy. I am however wondering if
it is not supposed to be output files from cuffdiff regarding each replicate.
Anyone know why those (read.group-files) are not there, or when they will be
if it is because of the version used in Galaxy. I find it very valuable to
have those to be able to see intra/inter-group features in downstream
analysis.
Thanks,
Johanna
..
Johanna Sandgren, PhD
Department of Oncology-Pathology
CCK, Karolinska Institutet
SE-171 76 Stockholm, Sweden
+46-8-517 721 35 (office),
+46-8- 321047(fax), +46-708 388476 (mobile)
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