[galaxy-user] integrating external Data Sources while running behind a firewall

Hi, I am not sure if I understand correctly how the external data sources (i.e. BioMart) are integrated into Galaxy. However, I believe that the Galaxy sends an HTTP request to the external data source with the parameter GALAXY_URL - and this URL is used later by the external data source to send p

Re: [galaxy-user] integrating external Data Sources while running behind a firewall

Hi Martin, Your galaxy instance does not have to be accessible from outside. The GALAXY_URL is send to the external datasource to create a new url that your browser understands and that galaxy will use to retrieve the data prepared by the service. E.g. http://localhost/galaxy/tool_id=1?url=http://e

Re: [galaxy-user] integrating external Data Sources while running behind a firewall

Aha! Thank you; it's clear now - and it's working fine behind our firewall. Martin -- Martin Senger email: martin.sen...@gmail.com,martin.sen...@kaust.edu.sa skype: martinsenger ___ The Galaxy User list should be used for the discussion of G

[galaxy-user] local directory

I installed Galaxy on my own linux machine. I would like to perform analysis on local RNAseq files since they are too big to upload. How do we add files from a local directory or a network share? A L B E R T ___ The Galaxy User list sh

Re: [galaxy-user] local directory

On Fri, Mar 11, 2011 at 10:07 PM, Albert Ayoub wrote: > I installed Galaxy on my own linux machine. I would like to perform analysis > on local RNAseq files since they are too big to upload. How do we add files > from a local directory or a network share? > Providing you are a Galaxy admin, and t