Hello,
May I use galaxy to do correlation analyses with two continuous
quantitative data sets containing different coordinates (two different
microarray designs)?
How can I create sliding windowed averages for these data sets to
accomplish this?
How can I perform a correlation analysis with a wi
On Dec 13, 2011, at 5:33 AM, Paul-Michael Agapow wrote:
> A perhaps obvious question: how do I work out what version of Galaxy an
> instance is?
>
> This has come up a few times because of apparent bugs and different
> behaviour across various development and production instances. Now if you’
On Dec 14, 2011, at 11:19 AM, Magdalena Strzelecka wrote:
> Hi,
>
> I have submitted some jobs to Tophat, but they have not started since
> yesterday (Dec 13th); i.e they were in a queue for >12 hrs. I have
> re-submitted everything again (2 jobs), but the same situation is happening.
> Is th
Hi,
I was searching for how to run a workflow for multiple input files and I
was very happy to find it's already implemented as mentioned here:
http://wiki.g2.bx.psu.edu/News%20Briefs/2011_05_20
The problem is that it's not working for me. When I select two files, for
example, it runs the workflow
Adhemar,
This was a bug that has been fixed as of changeset 6368:de03f821784b, which
should be available on main.g2.bx.psu.edu in the near future. If you're
running a local instance, you'll find this resolved as soon as you update to
that changeset or higher.
Unfortunately, there isn't a fast
Dannon,
Thanks for the immediate reply.
I just retrieved the latest code from the repository and it's not working
$ hg summary
parent: 6298:b258de1e6cea tip
I also tried 'hg pull -u -r 6368:de03f821784b' but it says:
pulling from https://bitbucket.org/galaxy/galaxy-dist
abort: unknown revision
Ahh, I should have specified, that changeset is in the galaxy-central
repository and has not been moved to galaxy-dist yet. I think we're testing a
few more things, but this should happen in the near future, at which point you
could simply update from galaxy-dist as usual, or you could pull dir
I already tested and it's working like a charm.
Thank you very much Dannon.
-Adhemar
2011/12/19 Dannon Baker
> Ahh, I should have specified, that changeset is in the galaxy-central
> repository and has not been moved to galaxy-dist yet. I think we're
> testing a few more things, but this should
Hi guys,
It looks like my security group rules didn't get saved. I'm going to
try again and report back.
I actually asked this question on Biostar too. I thought my email
didn't make it to the user group.
It probably makes sense to consolidate in one place so I'm continuing
the updates over th
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