Dear all,
My Cufflinks jobs keep getting killed due to the walltime limit. Is there a way
to fix this or is there anything I can do to reduce the size of my BAM datasets
so the analysis can get done?
Thank you!
Peera Hemarajata
___
The Ga
Greg;
I've been looking into this and am unfortunately still not able to
reproduce it. It seems like the setTimeout in the javascript code which
calls the function until the state becomes 'running' is not being
correctly run. There are some bugs out there with older versions of
Firefox and Firebug
Thanks for looking into it. I'm not sure what the issue is. If it
works for everyone else, I guess that's good enough.
Thanks again,
Greg
On Mon, Jan 30, 2012 at 6:53 AM, Brad Chapman wrote:
>
> Greg;
> I've been looking into this and am unfortunately still not able to
> reproduce it. It seem
What do you guys think about having more instance type options on the
BioCloud Central launch page?
I am interested in using the "Hi-Memory On-Demand Instances". Would
CloudMan/Galaxy have any problems running on those instances?
Thanks,
Greg
Hello Stefan,
Are you still having this problem? One thought is that this file is some
sort of README file in with the other data files from you source.
Another is that the data is an annotation file, not a sequence file,
with one or more columns of data in HTML format.
Some things to check:
Dear galaxy admins,
I am working on a hi-seq project, where each file is ~ 50G. I have 8 of
them. After I uploaded my files, I realized that I have reach my quote
limit. Literally, I can't do any mapping or actions on these files since I
have no disk space for it.
I was wondering if there's any
Hi Jen,
On 30.01.2012 16:12, Jennifer Jackson wrote:
> Are you still having this problem? One thought is that this file is some
> sort of README file in with the other data files from you source.
> Another is that the data is an annotation file, not a sequence file,
> with one or more columns of d
Peera,
Turning off bias correction can significantly shorten Cufflinks runtime.
If you still encounter this error, you'll want to use a local or cloud instance
of Galaxy:
https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy
http://wiki.g2.bx.psu.edu/Admin/Cloud
Good luck,
J.
On Jan 30,
Hello Vikram,
I just did a small test with one of the tools in this group with mm9
test data and the filter by species was fine. Perhaps something is not
set up correctly? Or there is problem with a different tool (you didn't
mention which in the set you were using, or I missed it!). Here is m
On Jan 30, 2012, at 11:37 AM, Stefan Kroeger wrote:
> Hi Jen,
>
> On 30.01.2012 16:12, Jennifer Jackson wrote:
>> Are you still having this problem? One thought is that this file is some
>> sort of README file in with the other data files from you source.
>> Another is that the data is an annota
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