Re: [galaxy-user] MACS failed because of lambdaset options

2012-10-29 Thread Jennifer Jackson
Hello Philipe, Is this problem occurring on the public Main Galaxy server at http://main.g2.bx.psu (usegalaxy.org)? If so, please submit a bug report so that we can examine. http://wiki.g2.bx.psu.edu/Support#Support.Reporting_tool_errors If this is occurring on a local instance, it could be t

[galaxy-user] Latest supported Cufflinks?

2012-10-29 Thread Bidwell, Christopher A.
I am interested in using Cufflinks 2.0 on our local instance of Galaxy but I am not sure if it is supported yet. We did Galaxy update in early October and we tried to install cufflinks V2.0 and it seems to run. I get the output files and they have the genes listed but 0.000 for all results (usin

Re: [galaxy-user] Latest supported Cufflinks?

2012-10-29 Thread Jennifer Jackson
Hello Chris, Cufflinks 1.3 is currently supported. However, this may be unrelated, or rather you may need so solve another problem first. The error seems to be related to how you have the reference data set up and some of the tool options you are using (bias correction = Y ?). Difficult to tel

Re: [galaxy-user] Latest supported Cufflinks?

2012-10-29 Thread hoga...@gmail.com
lets.see the.data, i would be surprised if there was much cross hyb T-Mobile. America’s First Nationwide 4G Network - Reply message - From: "Jennifer Jackson" To: "Bidwell, Christopher A." Cc: "galaxy-u...@bx.psu.edu" Subject: [galaxy-user] Latest supported Cufflinks? Date: Mon, Oct 29