Dear Galaxy Team,
I have a question regarding the fastq quality trimmer (by sliding window)
tool. What is the script running behind it? Is it a modified version of the
fastx_quality_trimmer found in the fastx tools package? Is there a
standalone version of it one can set up locally and run it
Hello Tomaz(,
There are three trimming tools. One is from the FASTX Tool kit, the
others are not, and all can be run from the command line. They can be
found in the Galaxy distribution:
http://getgalaxy.org
Tool names that you will see in the web browser mapped to where the
wrappers are in
Hi Tomaž,
The script depends on galaxy libraries, but could probably be set up
standalone if you made the appropriate libraries available -- the source is
distributed with galaxy, see
https://bitbucket.org/galaxy/galaxy-central/src/tip/tools/fastq/fastq_trimmer_by_quality.py?at=default
-Dannon
Hello all,
The 2013 GMOD Summer School is now accepting applications. Galaxy will
again be included in the topics covered.
And Amelia says:
Applications are competitive, so we encourage you to apply well before the
deadline, June 10th.
So, if you are interested, act soon.
Dave C
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