[galaxy-user] Emptying my account for good

2013-07-16 Thread GANDRILLON OLIVIER
Hi I am trying to get rid of all my previous files, in order to upload new ones. I usually use delete permanently for that, but this time, only used delete. And now I am stuck: the site says I am using 69 % of my account, although my history is empty, and everything is empty, and 100 % should

Re: [galaxy-user] [galaxy-dev] Connecting to new Galaxy Cloudman by FTP

2013-07-16 Thread Daniel Blankenberg
Hey Mo, You can use ssh to connect to the Galaxy machine. If you used cloudlaunch to create your instance, it should display an example connection string that will work from e.g. a linux/mac shell, something like: 'ssh -i cloudman_keypair.pem ubuntu@IP', after your instance launched. Once

[galaxy-user] Problem with repeated genes in Cuffdiff's output

2013-07-16 Thread Hoang, Thanh
Hi all, I am working on RNA-seq using TopHat/Cufflink/Cuffdiff for differential gene expression and new gene discovery ( this is what I am interested in). However, I found many genes that are repeated in the Cuffdiff's ouput. These are the same genes and at the exact the same locus. There should

Re: [galaxy-user] Emptying my account for good

2013-07-16 Thread Jennifer Jackson
Hi Olivier, As you probably know, delete does not remove data from your quota allotment, only permanently delete or purging does that. This is true for both individual datasets and for the histories that contain groups of datasets. To perm delete entire histories, and this seems like a good