In the past, others have had success using Cummerbund with Galaxy, and there's
even a Cummerbund wrapper in the tool shed:
http://toolshed.g2.bx.psu.edu/view/jjohnson/cummerbund
That said, it appears that replicate information is largely contained in the
read group tracking files, which are
Hello all,
The August 2013 Galaxy Update is now
availablehttp://wiki.galaxyproject.org/GalaxyUpdates/2013_08
.
*Highlights:*
-
*GCC2013
Reporthttp://wiki.galaxyproject.org/GalaxyUpdates/2013_08#GCC2013_Report
:* Meeting summaries, and links to videos, talks, posters, and Training
That's a neat trick, and I definitely wouldn't have thought of that
approach, so thanks for that!
After I finished writing this out, I realized it was super long. So here
are the questions I'm asking up front, so you can choose whether or not to
read the details. Thanks!
1. How do I output the
On Wednesday, July 31, 2013, Mayank Tandon wrote:
That's a neat trick, and I definitely wouldn't have thought of that
approach, so thanks for that!
After I finished writing this out, I realized it was super long. So here
are the questions I'm asking up front, so you can choose whether or
Exactly. Jennifer's solution for outputting unmapped reads involves
splitting the FASTQ file into basically two FASTA files, one with sequences
and the other with the corresponding quality score string. So, yes, they
would be matched files.
On Wed, Jul 31, 2013 at 4:42 PM, Peter Cock
5 matches
Mail list logo
