[galaxy-user] problems with MAF alignment file in Galaxy

2014-05-15 Thread Amit Pande
Dear Galaxy, I am trying to import a multiz alignment file for all the insect species from the UCSC genome browser. Galaxy does not recognize number of blocks in the multiz file as there is a question mark in the file format view (? blocks). Then when I am trying to use the tool ( Extract MAF bloc

Re: [galaxy-user] problems with MAF alignment file in Galaxy

2014-05-15 Thread Jennifer Jackson
Hi Amit, This is occurring when you are uploading a MAF "multizXXway" file obtained from UCSC downloads (genome.ucsc.edu) to Galaxy main (usegalaxy.org)? Upload using FTP? https://wiki.galaxyproject.org/Support#Loading_data The table browser is generally a poor choice to extract more than a

Re: [galaxy-user] edit file in galaxy

2014-05-15 Thread Ay Ayy
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Re: [galaxy-user] edit file in galaxy

2014-05-15 Thread Jennifer Jackson
Hello, You can use the tools in the groups "Text Manipulation", "Filter and Sort", and the "Get Data -> Upload File -> paste text into the box". There are also other replies along the same thread previously posted to this list, but incorporated into Galaxy Biostar. For example: https://biost