[galaxy-user] Gro-seq! and Galaxy

Hi all, I have BED and WIG files from Gro-Seq but Galaxy did not recognize these files. WHY is that? Please accept my appreciation Di Nguyen UW, Seattle, WA ___ The Galaxy User list should be used for the discussion of Galaxy analysis

[galaxy-user] How to count reads in 200bp windows and save the output per chromosome?

n -> feature 2. Questions: how do I sort and save per chromosome? For example, I would like to compare X chromosome versus autosomes or X versus chromosome 1? Please accept my appreciation, Di Nguyen, U of Washington, WA ___ The Galaxy U

[galaxy-user] How to select line with chr1?

Hi all, I have a a bed file that I would like sort for chromosome 1 ONLY? Would you tell me the syntax to "select" lines that are chromosome 1 only instead of 1 or 10,11-19? Thank you very much, Di Nguyen U of Washington ___

[galaxy-user] Problem setting up admin in Galaxy local instance!

you very much, Di Nguyen, postdoc U of Washington, Seattle, WA ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by

[galaxy-user] Uploading files into local instance! Please help!

instruction. I got no problem setting up Fizilla against Main Galaxy. I looked at the wiki page but not quite clear on what to do 2.Direct upload from local file path (limit by the size of the file << 2Gb, which is not practical? My utmost appreciation, Di Nguyen U of Washington, Seatt