[galaxy-user] Extreme Newbie Question

2013-07-14 Thread Seth Stern
.psu.edu/datasets/bbd44e69cb8906b504f52516868a1f84/edit> ? ZIP file contained more than one file, only the first file was added to Galaxy. Can anyone tell me how to diagnose the problem ? Many thanks, Seth Seth Stern, Ph.D. seths...@comcast.net 650 996

[galaxy-user] Amplicon Sequencing Questions

2013-07-17 Thread Seth Stern
ly shorter than the reads) ? If not, how should I do it ? Thanks, Seth Seth Stern, Ph.D. seths...@comcast.net 650 996 8726 (cell) ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on

[galaxy-user] Trackster Error

2013-07-21 Thread Seth Stern
Hi, I'm trying to visualize a BWA mapping using Trackster, but I'm getting this error: Trackster Error needLargeMem: trying to allocate 0 bytes (limit: 1000) Can anyone explain to me what is going on and possibly how to fix it ? Thanks, Seth Seth S

[galaxy-user] Launching IGB from Galaxy

2013-07-21 Thread Seth Stern
in.g2.bx.psu.edu/display_application/bbd44e69cb8906b5 ec213d3ada68caac/igb_bam/Local/1ce2985e52430eb3/data/SAM_to_BAM_on_data_10_a nd_data_20__converted_BAM_bbd44e69cb8906b5ec213d3ada68caac.bam&server_url=ga laxy Can anyone help me understand what is going on ? Thanks, Seth Seth