On Jan 30, 2012, at 11:37 AM, Stefan Kroeger wrote:
Hi Jen,
On 30.01.2012 16:12, Jennifer Jackson wrote:
Are you still having this problem? One thought is that this file is some
sort of README file in with the other data files from you source.
Another is that the data is an annotation file, not a sequence file,
with one or more columns of data in HTML format.
yes I still have the problem, but to ensure it's not a file error I will
check the original data from the lab.
if the problem is still present I will come back to you.
Some things to check:
- have you opened/uncompressed the file locally to see if it contains
any HTML?
it's a complete lane so really hard to check by eye ;-)
do you know any kind of command line fasta validation tool?
- are you able to download, uncompress, and then load the file
uncompressed or does that also give errors? Using upload from the
desktop or FTP?
tried both, no changes.
Hi Stefan,
Could you upload it to the FTP site and then send us the filename, without
attempting to import it using the Upload File tool in the web interface?
I'll grab a copy and take a look at it.
--nate
Thanks best regards
Stefan
[...]
On 1/26/12 5:55 AM, Stefan Kroeger wrote:
hi,
Maybe anybody can give me a hint for the following problem...
When I try to upload a fastq.gz file into galxy using url function the
input os canceled with the following exception:
An error occurred running this job: The uploaded file contains
inappropriate HTML content
I don't know where to start to have a look at. The upload of all other
fastq.gz files from the same run works smooth.
best
stefan
PS. Yes I know, the problem is really unspecific, sorry for that...
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