Hi Sarah,
One of the specifications of BED format is that the coordinates are with
respect to the forward strand.
BED format originated at UCSC, and this is their full specification:
http://genome.ucsc.edu/FAQ/FAQformat.html#format1
And Galaxy's summary (also on tool forms that accept BED for
Hello,
I am trying to extract sequences from a FASTA file containing genomic
information. The coordinates are in a tab-delimited format, which is recognized
as BED format by Galaxy (meaning that the 6th column is correctly interpreted
as 6. Strand).
However, upon running "Fetch sequences" , Ex
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