Re: [galaxy-user] Fwd: Exome Sequencing Analysis

2013-10-07 Thread Jennifer Jackson
Hi Johnathan, First, double check the column order as described on the tool form, using the "Cut" tool as needed to rearrange data. Next, double check that the format is assigned correctly as interval and the columns assigments are made correctly as well (both can be done by clicking on penci

[galaxy-user] Fwd: Exome Sequencing Analysis

2013-10-07 Thread Johnathan Cooper-Knock
Hello, My name is Johnathan Cooper-Knock, I am a clinical fellow based at the University of Sheffield, UK. I am trying to use Galaxy for analysis of DNA sequencing data and I have run into a problem. I am trying to run the SAM/BAM Hybrid Selection Metrics step on Galaxy (part of the Picard tools)