Re: [galaxy-user] Galaxy Join takes too long?

2013-02-12 Thread Milad Bastami
etics Shahid Beheshti's university of Medical Science  > > From: Jennifer Jackson >To: Milad Bastami >Cc: "galaxy-user@lists.bx.psu.edu" >Sent: Tuesday, February 12, 2013 6:56 PM >Subject: Re: [galaxy-user] Galaxy Join takes to

Re: [galaxy-user] Galaxy Join takes too long?

2013-02-12 Thread Jennifer Jackson
Hello Milad, I am not sure if you are using the public Galaxy Main server (https://main.g2.bx.psu.edu) or your own local computer, or if the jobs are yellow and running or still grey and in the waiting-to-run stage. If using Galaxy Main, and if actually running (dataset is yellow), this type

[galaxy-user] Galaxy Join takes too long?

2013-02-12 Thread Milad Bastami
I'm trying to joint two large intervals (one with 800,000 intervals and the other with about 350,000 intervals) using operates on intervals > join tool . I have no idea how long it should takes normaly. Two days have past and it is still runnig. Is there any limitation in file size for this tool