Hello again,
The general path will be:
- "Convert Formats -> GFF-to-BED"
- click on pencil icon to assign format as "interval", double checking
the assignment of the columns, including strand.
From there you have different analysis choices, including:
* Find out which UCSC tracks have annota
Hello Abdullah,
Galaxy can convert BED data to GFF data (type in "GFF" in tool search,
top of right tool panel). So, any BED file created (MACS, etc.) or
imported ("Get Data" or other) could be converted and exported as GFF.
Please note this is "GFF", not "GFF3".
SeqMonk also accepts BED for
Hi,
Is it possible to generate gff file in galaxy which I can use in Seqmonk?
Abdullah
--
Abdullah Al Mahmud, PhD
Postdoctoral fellow
University of Montreal
Lab of Dr. Jacques Michaud
CHU Sainte-Justine Research Center,
3175, Cote-Sainte-Catherine, A-709
Montreal, Quebec, H3T 1C5, Canada.
abdul
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