I second that, I just ran my first run of Groomer today and I would have
cancelled the top for taking too long if I didn't know the CPU was busy.
-John
On 2/24/11 11:24 AM, "Johnson, Kory (NIH/NINDS) [C]"
wrote:
Hello,
Do you have a chart or table that projects time for Groomer to complete vs
number of reads provided?
Have submitted job totaling 25M Illumina reads in FASTQ v1.3+ format and it is
taking time on the order of days.
What would be helpful, if not on the development schedule is a progress bar or
% completed reported as text, anything to give indication that the job
submitted is processing correctly, not hung, and it can be estimated how long
it will take.
Thank you,
Kory Johnson
Kory R. Johnson, MS, PhD
Sr. Bioinformatics Scientist
[cid:3381394372_81836924]
www.kellygovernmentsolutions.com
Providing Contract Services For:
Bioinformatics Section,
Information Technology & Bioinformatics Program,
Division of Intramural Research (DIR),
National Institute of Neurological Disorders & Stroke (NINDS),
National Institutes of Health (NIH),
Bethesda, Maryland
Mailing Address:
NINDS/NIH
Clinical Center (Building 10)
Office 5S223
9000 Rockville Pike
Bethesda, MD 20892
Contact Information:
Phone:301-402-1956
Fax: 301-480-3563
email: johnso...@ninds.nih.gov
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