Re: [galaxy-user] How to do an GO enrichment analysis in Galaxy?

2012-10-07 Thread Björn Grüning
Hi Yan,

have a look at the blast2GO wrapper in the toolshed. If you already have
gene-ids you can download the GO in an appropriate format and intersect
with your ids.

Hope that works,
Bjoern

> Hi everyone,
> 
>  
> 
> I got a list of differentially expressed genes from my RNA-seq data.
> Is there a tool on Galaxy that I can do the GO enrichment analysis for
> the differentially expressed genes? Any help or suggestion is highly
> appreciated!
> 
>  
> 
> Best regards,
> 
> Yan
> 
> 
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> 
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[galaxy-user] How to do an GO enrichment analysis in Galaxy?

2012-10-07 Thread Yan He
Hi everyone,

 

I got a list of differentially expressed genes from my RNA-seq data. Is
there a tool on Galaxy that I can do the GO enrichment analysis for the
differentially expressed genes? Any help or suggestion is highly
appreciated!

 

Best regards,

Yan

___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

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