Re: [galaxy-user] Stitch MAF blocks

2013-09-25 Thread Jennifer Jackson
r you to fix it? Thanks. Jennifer *Da:* Jennifer Jackson *Inviato:* martedì 24 settembre 2013 17:13 *A:* Jennifer Di Tommaso *Cc:* galaxy-user@lists.bx.psu.edu *Oggetto:* Re: [galaxy-user] Stitch MAF blocks Hello, Yes, this

Re: [galaxy-user] Stitch MAF blocks

2013-09-25 Thread Jennifer Di Tommaso
alaxy-user@lists.bx.psu.edu Oggetto: Re: [galaxy-user] Stitch MAF blocks Hello, Yes, this tool functions on MAF input. For examples through several cases with this tool group, including this tool, please see: " Making whole genome alignments usable for biologists" publication &

Re: [galaxy-user] Stitch MAF blocks

2013-09-24 Thread Jennifer Jackson
Hello, Yes, this tool functions on MAF input. For examples through several cases with this tool group, including this tool, please see: " Making whole genome alignments usable for biologists" publication & supplemental. https://main.g2.bx.psu.edu/u/dan/p/maf "Using Galaxy" publication & sup

[galaxy-user] Stitch MAF blocks

2013-09-24 Thread Jennifer Di Tommaso
Hi, I don't undestand how to use the tool "Stitch MAF blocks". I update a small bed file and now I need to run this tool, I don't understand the next step. I'm searching for Novel Linc in some RNA-seq data and I found the lncRscan tool (http://code.google.com/p/lncrscan/wiki/example) and now I h