Re: [galaxy-user] gene or transcript differential expression testing

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi, proteins are synthetised from transcripts, not from genes, so I wouldn't use gene DE. It can become quite tricky to interpret these for some alternative transcripts. Beast, Leonor. On 28/07/12 18:06, i b wrote: > Hi, > I am a bit confused about

[galaxy-user] gene or transcript differential expression testing

Hi, I am a bit confused about two outputs of cuffdiff: If I want to see if two samples, e.g. treated and un-treated express similar protein levels, what would be best to look at gene differential expression or transcript diff. expression? Thanks, ib