Re: [galaxy-user] symbolic link to bowtie

2011-07-28 Thread Jennifer Jackson
Hello Luciano, You probably need to be root to write to /bin (often done by leading the command string with a "sudo"). It depends on how your system is set up. But you don't need to put bowtie at the top level /bin, it doesn't really belong there as a higher global function. It can go in a low

[galaxy-user] symbolic link to bowtie

2011-07-27 Thread Luciano Cosme
Hi, I am running Galaxy locally (Ubuntu 11.04) and I am getting this error message when I try to use mapping with bowtie: Error indexing reference sequence /bin/sh: bowtie-build: not found Then I downloaded bowtie and tried to create a symbolic link using at /bin: ln -s /home/koala2/bowtie