I am working on the project to predict SNP from NGS data. I have found SNP
using SAM tools and GATK (used reference hg19). I would like to know effect
of SNP using SNPeff in GALAXY. I have given SNP in vcf format. I could not
change the genome option as human, it is set is C.elegans by default
Plea
Hi Sathya,
The public Main Galaxy instance is down right now due to server issues.
We anticipate this to be resolved by end of today.
Please watch the messages at http://usegalaxy.org for updates.
You can also follow Twitter at @galaxyproject, also posted on our wiki:
https://wiki.galaxyproje
Seems to be down a lot these days...Maybe Dave could update us on the
future of Galaxy.
Scott Tighe
Senior Core Laboratory Research Staff
Advanced Genome Technologies Core
NextGen Sequencing/Flow Cytometry
University of Vermont and Vermont Cancer Center
149 Beaumont ave
Health Science Research F
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