Re: [galaxy-user] Enquiry regarding the working of Galaxy

2014-03-11 Thread Scott Tighe
Seems to be down a lot these days...Maybe Dave could update us on the future of Galaxy. Scott Tighe Senior Core Laboratory Research Staff Advanced Genome Technologies Core NextGen Sequencing/Flow Cytometry University of Vermont and Vermont Cancer Center 149 Beaumont ave Health Science Research

Re: [galaxy-user] Enquiry regarding the working of Galaxy

2014-03-11 Thread Jennifer Jackson
Hi Sathya, The public Main Galaxy instance is down right now due to server issues. We anticipate this to be resolved by end of today. Please watch the messages at http://usegalaxy.org for updates. You can also follow Twitter at @galaxyproject, also posted on our wiki:

Re: [galaxy-user] Enquiry regarding the working of Galaxy

2014-03-11 Thread Sathya
I am working on the project to predict SNP from NGS data. I have found SNP using SAM tools and GATK (used reference hg19). I would like to know effect of SNP using SNPeff in GALAXY. I have given SNP in vcf format. I could not change the genome option as human, it is set is C.elegans by default