Hello Abdullah,
Galaxy can convert BED data to GFF data (type in GFF in tool search,
top of right tool panel). So, any BED file created (MACS, etc.) or
imported (Get Data or other) could be converted and exported as GFF.
Please note this is GFF, not GFF3.
SeqMonk also accepts BED format, so
Hello again,
The general path will be:
- Convert Formats - GFF-to-BED
- click on pencil icon to assign format as interval, double checking
the assignment of the columns, including strand.
From there you have different analysis choices, including:
* Find out which UCSC tracks have annotation
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