data for further analysis such as TOPHAT? Should I skip the steps to
compute quality statistics and draw boxplots using the groomed data?
Thanks,
tao
-Original Message-
From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: Fri 8/26/2011 7:19 PM
To: galaxy-user
Cc: Peng, Tao
Subject: Re: [gala
===> Please use "Reply All" when responding to this email! <===
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Hello Tao,
The tool "NGS: QC and manipulation -> FastQC" (last tool in group) may
be helpful for your project.
In general, sequence with quality scores this low wou
Great :)
Don't forget to CC the mailing list in future ;)
On Fri, Feb 25, 2011 at 4:46 PM, Amy Boddy wrote:
> Thank you, these articles helped!
>
> On Thu, Feb 24, 2011 at 5:47 PM, Peter Cock
> wrote:
>>
>> On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy wrote:
>> > Hello,
>> > I was wondering how
On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy wrote:
> Hello,
> I was wondering how Galaxy calculates the quality score for NGS data?
> Is there any documentation I could read on how this is calculated?
> Thanks!
> -Amy Boddy
Which quality score are you talking about? Raw reads? Mappings?
If it's FA
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