Re: [galaxy-user] Quality report

2013-11-06 Thread Benjamin Osei-agyeman
Thanks a lot!! ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussi

Re: [galaxy-user] Quality report

2013-11-06 Thread James Taylor
On Wed, Nov 6, 2013 at 12:54 PM, Benjamin Osei-agyeman < benjy_o...@yahoo.co.uk> wrote: > The report was obtained after running fastqc on my data. However after > looking at the report statistics, the > Quality is not good in the Per Base Sequence Quality and there is a > difference between the me

Re: [galaxy-user] Quality report

2013-11-06 Thread Benjamin Osei-agyeman
difference between the mean and median in the fastqc report at each cycle? Benjy From: Benjamin Osei-agyeman ; To: Ido Tamir ; Cc: ; Subject: Re: [galaxy-user] Quality report Sent: Wed, Nov 6, 2013 5:31:22 PM The report was obtained after

Re: [galaxy-user] Quality report

2013-11-06 Thread Ido Tamir
Please be more specific about which quality of what gets reported. Why do you think its important to reduce the difference between mean and median? best, ido On Nov 6, 2013, at 4:50 PM, Benjamin Osei-agyeman wrote: > Hi, > After obtaining a quality report in galaxy I found out that there is a