Re: [galaxy-user] help for trim sequences

2013-11-25 Thread Jennifer Jackson
Hi Seung Hee, You can request that this tool be added to the public Main server at usegalaxy.org through Trello and the team will consider it. For right now, the options are local or cloud. (as in my other reply) Or, you can look around the the other public servers hosted by our community -

Re: [galaxy-user] help for trim sequences

2013-11-25 Thread Jennifer Jackson
Thanks Peter for another option! Jen Galaxy team On 11/23/13 6:19 AM, Peter Cock wrote: On Fri, Nov 22, 2013 at 8:48 PM, Jennifer Jackson wrote: Hi Seung Hee, I know we discussed this on the other list, but I didn't point you to the open development ticket to (potentially) extend the functio

Re: [galaxy-user] help for trim sequences

2013-11-25 Thread Jennifer Jackson
Thanks Geert, This tool was in the back on my mind, but I couldn't find it last week for some reason! Seung Hee - this is a very good choice, for use in a local or or cloud Galaxy. http://getgalaxy.org http://usegalaxy.org/cloud I think I will close out the ticket below and point it to Cu

Re: [galaxy-user] help for trim sequences

2013-11-25 Thread Geert Vandeweyer
You might also use ( / add to main) the CutAdapt tool, which is available in the main toolshed. It takes multiple adapters, allows 3/5/both side adapters, and is fast. http://toolshed.g2.bx.psu.edu/repository/view_repository?sort=User.username&operation=view_or_manage_repository&id=f19bc86bac94

Re: [galaxy-user] help for trim sequences

2013-11-23 Thread Peter Cock
On Fri, Nov 22, 2013 at 8:48 PM, Jennifer Jackson wrote: > Hi Seung Hee, > > I know we discussed this on the other list, but I didn't point you to the > open development ticket to (potentially) extend the functions of the "Cut" > tool. This is not being actively worked on right now, but you can fo

Re: [galaxy-user] help for trim sequences

2013-11-22 Thread Jennifer Jackson
Hi Seung Hee, I know we discussed this on the other list, but I didn't point you to the open development ticket to (potentially) extend the functions of the "Cut" tool. This is not being actively worked on right now, but you can follow it for updates if you want. https://trello.com/c/CbFSHrU5