Re: [galaxy-user] problems with the uploading

[Luciano Cosme]

Hi,
   I started using Galaxy on the cloud, but later I decided to install a
local instance. You can check it out here
http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy
If you have a reasonable computer probably you can run gene expression
analysis (tophat, cufflinks etc) locally. My local instance is way faster
than the public Galaxy server. I have an I7 2600k sandy bridge overclocked
to 4.2Ghz, 32 Gb DDR3 1600, GTX 570 fermi, and lots of hard drive space.
You can install one of the free Linux distributions (like Ubuntu or Fedora
along with Windows and have dual boot) or if you have a Mac you can also
use it too. If you gonna use it only once, maybe a cloud instance is the
easiest way to get it done, as Jennifer suggested.
Best,

Luciano



On Wed, Jun 6, 2012 at 9:26 AM, Jennifer Jackson  wrote:

> Hi Monica,
>
> From your description, moving to a cloud instance is going to be your best
> solution:
>
> http://usegalaxy.org/cloud
>
> If you have questions as you are getting set up, these are best directed
> at the galaxy-...@bx.psu.edu mailing list.
>
> Take care,
>
> Jen
> Galaxy team
>
>
> On 6/6/12 1:57 AM, Monica BALLARINO wrote:
>
>> Dear Galaxy team,
>>
>> I'm using Galaxy Main to run paired-end RNAseq data. I'm a new user and
>> I'm in trouble.
>>
>> I have a total of four set of data to compare: 2 negative controls and
>> two samples.
>>
>> I uploaded already three complete histories (as fastq files) which were
>> around 70 Gb each (MBO11, MBO12 and MBO13). I need to upload the last
>> history (MBO14) but unfortunately I just started and apparently I cannot
>> go further 'cause I've used already 100% of my space.
>>
>> Could you suggest please me a way to go on?
>>
>> My login is edoa...@igbmc.fr. Let me know if you would need my password
>> to check my account.
>>
>> Thanks a lot for your support.
>>
>> Monica
>>
>>
>>
>>
>>
>> __**_
>> The Galaxy User list should be used for the discussion of
>> Galaxy analysis and other features on the public server
>> at usegalaxy.org.  Please keep all replies on the list by
>> using "reply all" in your mail client.  For discussion of
>> local Galaxy instances and the Galaxy source code, please
>> use the Galaxy Development list:
>>
>>   
>> http://lists.bx.psu.edu/**listinfo/galaxy-dev
>>
>> To manage your subscriptions to this and other Galaxy lists,
>> please use the interface at:
>>
>>   http://lists.bx.psu.edu/
>>
>
> --
> Jennifer Jackson
> http://galaxyproject.org
> __**_
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>  
> http://lists.bx.psu.edu/**listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>  http://lists.bx.psu.edu/
>



-- 
*Luciano Cosme*

-
PhD Candidate
Texas A&M Entomology
Vector Biology Research Group
www.lcosme.com
979 845 1885
co...@tamu.edu
-
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Re: [galaxy-user] problems with the uploading

[Jennifer Jackson]

Hi Monica,

From your description, moving to a cloud instance is going to be your 
best solution:


http://usegalaxy.org/cloud

If you have questions as you are getting set up, these are best directed 
at the galaxy-...@bx.psu.edu mailing list.


Take care,

Jen
Galaxy team

On 6/6/12 1:57 AM, Monica BALLARINO wrote:

Dear Galaxy team,

I'm using Galaxy Main to run paired-end RNAseq data. I'm a new user and
I'm in trouble.

I have a total of four set of data to compare: 2 negative controls and
two samples.

I uploaded already three complete histories (as fastq files) which were
around 70 Gb each (MBO11, MBO12 and MBO13). I need to upload the last
history (MBO14) but unfortunately I just started and apparently I cannot
go further 'cause I've used already 100% of my space.

Could you suggest please me a way to go on?

My login is edoa...@igbmc.fr. Let me know if you would need my password
to check my account.

Thanks a lot for your support.

Monica





___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

   http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

   http://lists.bx.psu.edu/


--
Jennifer Jackson
http://galaxyproject.org
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/