[gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/
commit: 52d9da4d866e95afa5270fb9533fa359df0a9957
Author: Martin Mokrejs fold natur cuni cz>
AuthorDate: Sat Mar 30 23:36:06 2019 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Sat Mar 30 23:36:06 2019 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=52d9da4d
sci-biology/velvetk: drop faulty software per its author
From: Torsten S.
The velvetk.pl is faulty and should not be used.
Try `kmergenie` instead, or use the SPades Assembler.
sci-biology/velvetk/metadata.xml| 12
sci-biology/velvetk/velvetk-20120606.ebuild | 24
2 files changed, 36 deletions(-)
diff --git a/sci-biology/velvetk/metadata.xml b/sci-biology/velvetk/metadata.xml
deleted file mode 100644
index 138cb7705..0
--- a/sci-biology/velvetk/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-
- mmokr...@fold.natur.cuni.cz
- Martin Mokrejs
-
-
- sci-biol...@gentoo.org
- Gentoo Biology Project
-
-
diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild
b/sci-biology/velvetk/velvetk-20120606.ebuild
deleted file mode 100644
index a2fdb7c25..0
--- a/sci-biology/velvetk/velvetk-20120606.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit perl-module
-
-DESCRIPTION="Estimate the best k-mer size to use for your Velvet de novo
assembly"
-HOMEPAGE="http://www.vicbioinformatics.com/software.velvetk.shtml";
-SRC_URI="http://www.vicbioinformatics.com/velvetk.pl";
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"
-
-src_install(){
- dobin "${DISTDIR}"/velvetk.pl
-}
[gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/
commit: e342408b204d6966864aaebca258927ba00935e6
Author: Justin Lecher gentoo org>
AuthorDate: Sat Jan 10 12:56:34 2015 +
Commit: Justin Lecher gentoo org>
CommitDate: Sat Jan 10 12:56:34 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e342408b
sci-biology/velvetk: Simplify ebuild
Package-Manager: portage-2.2.15
---
sci-biology/velvetk/ChangeLog | 3 +++
sci-biology/velvetk/velvetk-20120606.ebuild | 6 +-
2 files changed, 4 insertions(+), 5 deletions(-)
diff --git a/sci-biology/velvetk/ChangeLog b/sci-biology/velvetk/ChangeLog
index 20f03c2..b1bf464 100644
--- a/sci-biology/velvetk/ChangeLog
+++ b/sci-biology/velvetk/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 10 Jan 2015; Justin Lecher velvetk-20120606.ebuild:
+ Simplify ebuild
+
07 Jan 2015; Martin Mokrejs
velvetk-20120606.ebuild:
added perl to dependencies
diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild
b/sci-biology/velvetk/velvetk-20120606.ebuild
index b6bfc94..ae7940c 100644
--- a/sci-biology/velvetk/velvetk-20120606.ebuild
+++ b/sci-biology/velvetk/velvetk-20120606.ebuild
@@ -20,10 +20,6 @@ RDEPEND="${DEPEND}"
S="${WORKDIR}"
-src_prepare(){
- cp -p "${DISTDIR}"/velvetk.pl . || die
-}
-
src_install(){
- dobin velvetk.pl
+ dobin "${DISTDIR}"/velvetk.pl
}
[gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/
commit: 2ac683eaf770db8ff97cc6f8c7aa8d2fd5bb7e74
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Wed Jan 7 21:39:09 2015 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Wed Jan 7 21:39:09 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2ac683ea
added perl to dependencies
Package-Manager: portage-2.2.7
---
sci-biology/velvetk/ChangeLog | 6 +-
sci-biology/velvetk/velvetk-20120606.ebuild | 4 ++--
2 files changed, 7 insertions(+), 3 deletions(-)
diff --git a/sci-biology/velvetk/ChangeLog b/sci-biology/velvetk/ChangeLog
index add4df7..20f03c2 100644
--- a/sci-biology/velvetk/ChangeLog
+++ b/sci-biology/velvetk/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-biology/velvetk
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 07 Jan 2015; Martin Mokrejs
+ velvetk-20120606.ebuild:
+ added perl to dependencies
+
*velvetk-20120606 (15 Apr 2014)
15 Apr 2014; Martin Mokrejs +metadata.xml,
diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild
b/sci-biology/velvetk/velvetk-20120606.ebuild
index 2ebb4f3..b6bfc94 100644
--- a/sci-biology/velvetk/velvetk-20120606.ebuild
+++ b/sci-biology/velvetk/velvetk-20120606.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -15,7 +15,7 @@ SLOT="0"
KEYWORDS="~amd64"
IUSE=""
-DEPEND=""
+DEPEND="dev-lang/perl"
RDEPEND="${DEPEND}"
S="${WORKDIR}"
[gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/
commit: 6662c1697f2b8a3ca44c0f5e72cdafff5da4d7b8
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Tue Apr 15 09:06:13 2014 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Tue Apr 15 09:06:13 2014 +
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6662c169
sci-biology/velvetk: new package
Package-Manager: portage-2.2.7
---
sci-biology/velvetk/ChangeLog | 9 +
sci-biology/velvetk/metadata.xml| 9 +
sci-biology/velvetk/velvetk-20120606.ebuild | 29 +
3 files changed, 47 insertions(+)
diff --git a/sci-biology/velvetk/ChangeLog b/sci-biology/velvetk/ChangeLog
new file mode 100644
index 000..add4df7
--- /dev/null
+++ b/sci-biology/velvetk/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/velvetk
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*velvetk-20120606 (15 Apr 2014)
+
+ 15 Apr 2014; Martin Mokrejs +metadata.xml,
+ +velvetk-20120606.ebuild:
+ sci-biology/velvetk: new package
diff --git a/sci-biology/velvetk/metadata.xml b/sci-biology/velvetk/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/velvetk/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+ sci-biology
+
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+
+
diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild
b/sci-biology/velvetk/velvetk-20120606.ebuild
new file mode 100644
index 000..2ebb4f3
--- /dev/null
+++ b/sci-biology/velvetk/velvetk-20120606.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+DESCRIPTION="Estimate the best k-mer size to use for your Velvet de novo
assembly"
+HOMEPAGE="http://www.vicbioinformatics.com/software.velvetk.shtml";
+SRC_URI="http://www.vicbioinformatics.com/velvetk.pl";
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"
+
+src_prepare(){
+ cp -p "${DISTDIR}"/velvetk.pl . || die
+}
+
+src_install(){
+ dobin velvetk.pl
+}
