[gentoo-commits] repo/gentoo:master commit in: dev-python/pytables/, dev-python/pytables/files/
commit: fe9b3c589dc0033b806bf3632e4fa9a445a696cd
Author: Michał Górny gentoo org>
AuthorDate: Thu May 11 06:20:47 2023 +
Commit: Michał Górny gentoo org>
CommitDate: Thu May 11 06:22:22 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fe9b3c58
dev-python/pytables: Backport cython-3 fix
Closes: https://bugs.gentoo.org/898710
Signed-off-by: Michał Górny gentoo.org>
.../pytables/files/pytables-3.8.0-cython3.patch| 40 ++
dev-python/pytables/pytables-3.8.0-r3.ebuild | 1 +
2 files changed, 41 insertions(+)
diff --git a/dev-python/pytables/files/pytables-3.8.0-cython3.patch
b/dev-python/pytables/files/pytables-3.8.0-cython3.patch
new file mode 100644
index ..9ad0b72d224a
--- /dev/null
+++ b/dev-python/pytables/files/pytables-3.8.0-cython3.patch
@@ -0,0 +1,40 @@
+From a70e36f0b0d4fb15b0b50e7ca513c4e4452767cc Mon Sep 17 00:00:00 2001
+From: Matus Valo
+Date: Wed, 15 Mar 2023 22:49:07 +0100
+Subject: [PATCH] Fix build errors when compiled using cython 3.0.0b1.
+
+---
+ pyproject.toml| 2 +-
+ tables/tableextension.pyx | 2 +-
+ tables/utilsextension.pyx | 2 +-
+ 3 files changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/tables/tableextension.pyx b/tables/tableextension.pyx
+index 8f3bb01b..4a50c6ab 100644
+--- a/tables/tableextension.pyx
b/tables/tableextension.pyx
+@@ -37,7 +37,7 @@ from .utils import SizeType
+ from .utilsextension cimport get_native_type, cstr_to_pystr
+
+ # numpy functions & objects
+-from hdf5extension cimport Leaf
++from .hdf5extension cimport Leaf
+ from cpython cimport PyErr_Clear
+ from libc.stdio cimport snprintf
+ from libc.stdlib cimport malloc, free
+diff --git a/tables/utilsextension.pyx b/tables/utilsextension.pyx
+index 5b16dcd3..664e1ea5 100644
+--- a/tables/utilsextension.pyx
b/tables/utilsextension.pyx
+@@ -344,7 +344,7 @@ except ImportError:
+ #-
+
+ # Error handling helpers
+-cdef herr_t e_walk_cb(unsigned n, const H5E_error_t *err, void *data) with
gil:
++cdef herr_t e_walk_cb(unsigned n, const H5E_error_t *err, void *data)
noexcept with gil:
+ cdef object bt = data # list
+ #cdef char major_msg[256]
+ #cdef char minor_msg[256]
+--
+2.40.1
+
diff --git a/dev-python/pytables/pytables-3.8.0-r3.ebuild
b/dev-python/pytables/pytables-3.8.0-r3.ebuild
index c2dfebf6f12b..4eb70e76b350 100644
--- a/dev-python/pytables/pytables-3.8.0-r3.ebuild
+++ b/dev-python/pytables/pytables-3.8.0-r3.ebuild
@@ -52,6 +52,7 @@ python_prepare_all() {
local PATCHES=(
"${FILESDIR}"/${P}-blosc2.patch
"${FILESDIR}"/${P}-optional-cpuinfo.patch
+ "${FILESDIR}"/${P}-cython3.patch
)
export PYTABLES_NO_EMBEDDED_LIBS=1
[gentoo-commits] repo/gentoo:master commit in: dev-python/pytables/, dev-python/pytables/files/
commit: 637784cae39a93920b9738e8094d46d24331769d
Author: Sam James gentoo org>
AuthorDate: Mon Apr 3 01:50:20 2023 +
Commit: Sam James gentoo org>
CommitDate: Mon Apr 3 01:50:20 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=637784ca
dev-python/pytables: tweak cpuinfo patch
Signed-off-by: Sam James gentoo.org>
dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch | 9 ++---
.../{pytables-3.8.0-r2.ebuild => pytables-3.8.0-r3.ebuild} | 0
2 files changed, 6 insertions(+), 3 deletions(-)
diff --git a/dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch
b/dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch
index f56854b05289..2843914f4a87 100644
--- a/dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch
+++ b/dev-python/pytables/files/pytables-3.8.0-optional-cpuinfo.patch
@@ -1,6 +1,6 @@
https://github.com/PyTables/PyTables/pull/1013
-From 557f8c22b772506bfbb9e7eb4d60c0cf2125998b Mon Sep 17 00:00:00 2001
+From 9d2487eb53af940de3b5c79200c9f4c2b90f51f2 Mon Sep 17 00:00:00 2001
From: Sam James
Date: Mon, 3 Apr 2023 02:07:47 +0100
Subject: [PATCH] Handle py-cpuinfo not being installed
@@ -15,19 +15,20 @@ in places where py-cpuinfo isn't yet ported.
Signed-off-by: Sam James
--- a/tables/leaf.py
+++ b/tables/leaf.py
-@@ -4,7 +4,10 @@
+@@ -4,7 +4,11 @@ import warnings
import math
import numpy as np
-import cpuinfo
+try:
+import cpuinfo
++missing_cpuinfo = False
+except ImportError:
+missing_cpuinfo = True
from .flavor import (check_flavor, internal_flavor, toarray,
alias_map as flavor_alias_map)
-@@ -336,20 +339,21 @@ def _calc_chunkshape(self, expectedrows, rowsize,
itemsize):
+@@ -336,20 +340,21 @@ class Leaf(Node):
# Use a decent default value for chunksize
chunksize *= 16
# Now, go explore the L3 size and try to find a smarter chunksize
@@ -63,4 +64,6 @@ Signed-off-by: Sam James
# In Blosc2, the chunksize cannot be larger than 2 GB -
BLOSC2_MAX_BUFFERSIZE
if chunksize > 2**31 - 32:
chunksize = 2**31 - 32
+--
+2.40.0
diff --git a/dev-python/pytables/pytables-3.8.0-r2.ebuild
b/dev-python/pytables/pytables-3.8.0-r3.ebuild
similarity index 100%
rename from dev-python/pytables/pytables-3.8.0-r2.ebuild
rename to dev-python/pytables/pytables-3.8.0-r3.ebuild
[gentoo-commits] repo/gentoo:master commit in: dev-python/pytables/, dev-python/pytables/files/
commit: 6ed4d325a2563a195b41caef2c2c58ca18581e40
Author: Michał Górny gentoo org>
AuthorDate: Wed Dec 28 15:06:59 2022 +
Commit: Michał Górny gentoo org>
CommitDate: Wed Dec 28 15:31:55 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6ed4d325
dev-python/pytables: Bump to 3.8.0
Signed-off-by: Michał Górny gentoo.org>
dev-python/pytables/Manifest | 1 +
.../pytables/files/pytables-3.8.0-blosc2.patch | 30
dev-python/pytables/pytables-3.8.0.ebuild | 83 ++
3 files changed, 114 insertions(+)
diff --git a/dev-python/pytables/Manifest b/dev-python/pytables/Manifest
index c456f554b2d0..ea9d491502ea 100644
--- a/dev-python/pytables/Manifest
+++ b/dev-python/pytables/Manifest
@@ -1 +1,2 @@
DIST tables-3.7.0.tar.gz 8227955 BLAKE2B
0d5b7b765375c4787f1210138e5fd02e3c0ce429ef209a3a8d4fd3bc094f68486ab6f4d0a960ce86efea6991ed691ef2a3e9e8f37a49fe91cb8d6372cadea80e
SHA512
eaa368d063b5fad87e6d0f9ab6f02da0b2a3542740a52fe8c2bb58e41121495d07b6d2710ad402a28891294aa61a11238c6a7e2cf2933a1bb11391b79cf4fd13
+DIST tables-3.8.0.tar.gz 8014052 BLAKE2B
28d120ad609ebc9ae8cd97286bb3fb9c484bd8a179edcf0de1b96e4400b7a21b4db835d94fae3aaee84924bd46b84b84da12c538b39517362d805651e7aa3aef
SHA512
1616c00787a2e88ff3dc2aebe3a1b2ad428b5a8ea48fc94058b49c509f1c040b540b3f62551b16b3246d2fed58e0b33443cbdaaf1dfcba5a6eead5f3e8028029
diff --git a/dev-python/pytables/files/pytables-3.8.0-blosc2.patch
b/dev-python/pytables/files/pytables-3.8.0-blosc2.patch
new file mode 100644
index ..59403cdec12d
--- /dev/null
+++ b/dev-python/pytables/files/pytables-3.8.0-blosc2.patch
@@ -0,0 +1,30 @@
+From 99a7f336635aaeb666ea8dc791743177a030dc18 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?=
+Date: Wed, 28 Dec 2022 15:53:08 +0100
+Subject: [PATCH] Workaround blosc2 detection via blosc2 package
+
+---
+ setup.py | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/setup.py b/setup.py
+index 966be028..2708deb9 100755
+--- a/setup.py
b/setup.py
+@@ -262,11 +262,11 @@ if __name__ == "__main__":
+
+ debug = "--debug" in sys.argv
+
+-blosc2_inc, blosc2_lib = get_blosc2_directories()
++blosc2_inc, blosc2_lib = "", ""
+
+ # Global variables
+ lib_dirs = [blosc2_lib]
+-inc_dirs = [Path("hdf5-blosc/src"), Path("hdf5-blosc2/src"), blosc2_inc]
++inc_dirs = [Path("hdf5-blosc/src"), Path("hdf5-blosc2/src")]
+ optional_libs = []
+ copy_libs = []
+
+--
+2.39.0
+
diff --git a/dev-python/pytables/pytables-3.8.0.ebuild
b/dev-python/pytables/pytables-3.8.0.ebuild
new file mode 100644
index ..889a681566ed
--- /dev/null
+++ b/dev-python/pytables/pytables-3.8.0.ebuild
@@ -0,0 +1,83 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..11} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit distutils-r1
+
+MY_PN=tables
+MY_P=${MY_PN}-${PV}
+
+DESCRIPTION="Hierarchical datasets for Python"
+HOMEPAGE="
+ https://www.pytables.org/
+ https://github.com/PyTables/PyTables/
+ https://pypi.org/project/tables/
+"
+SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz"
+S=${WORKDIR}/${MY_P}
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="examples test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+ app-arch/bzip2:0=
+ app-arch/lz4:0=
+ >=app-arch/zstd-1.0.0:=
+ >=dev-libs/c-blosc-1.11.1:0=
+ dev-libs/c-blosc2:=
+ dev-libs/lzo:2=
+ >=dev-python/numpy-1.19[${PYTHON_USEDEP}]
+ >=sci-libs/hdf5-1.8.4:=
+"
+RDEPEND="
+ ${DEPEND}
+ >=dev-python/numexpr-2.6.2[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/py-cpuinfo[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ >=dev-python/cython-0.21[${PYTHON_USEDEP}]
+ dev-python/py-cpuinfo[${PYTHON_USEDEP}]
+ virtual/pkgconfig
+ test? (
+ ${RDEPEND}
+ )
+"
+
+python_prepare_all() {
+ local PATCHES=(
+ "${FILESDIR}"/${P}-blosc2.patch
+ )
+
+ export PYTABLES_NO_EMBEDDED_LIBS=1
+ export USE_PKGCONFIG=TRUE
+
+ rm -r c-blosc/{blosc,internal-complibs} || die
+ rm tables/libblosc2.so || die
+ distutils-r1_python_prepare_all
+}
+
+python_compile() {
+ distutils-r1_python_compile -j1
+}
+
+python_test() {
+ cd "${BUILD_DIR}"/lib* || die
+ "${EPYTHON}" tables/tests/test_all.py -v || die
+}
+
+python_install_all() {
+ distutils-r1_python_install_all
+
+ if use examples; then
+ dodoc -r contrib examples
+ docompress -x /usr/share/doc/${PF}/{contrib,examples}
+ fi
+}
[gentoo-commits] repo/gentoo:master commit in: dev-python/pytables/, dev-python/pytables/files/
commit: a9a3566f532b65a95141b1e5a9f013cb5c3df009
Author: Sam James gentoo org>
AuthorDate: Sat Nov 20 06:42:53 2021 +
Commit: Sam James gentoo org>
CommitDate: Sat Nov 20 06:42:53 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a9a3566f
dev-python/pytables: skip some known-failing tests on big endian
Use Debian's patch for this.
Bug: https://bugs.gentoo.org/805995
Signed-off-by: Sam James gentoo.org>
...tables-3.6.1-big-endian-tests-skip-subset.patch | 36 ++
dev-python/pytables/pytables-3.6.1-r1.ebuild | 1 +
2 files changed, 37 insertions(+)
diff --git
a/dev-python/pytables/files/pytables-3.6.1-big-endian-tests-skip-subset.patch
b/dev-python/pytables/files/pytables-3.6.1-big-endian-tests-skip-subset.patch
new file mode 100644
index ..6a492a1a581f
--- /dev/null
+++
b/dev-python/pytables/files/pytables-3.6.1-big-endian-tests-skip-subset.patch
@@ -0,0 +1,36 @@
+https://bugs.gentoo.org/805995
+https://github.com/PyTables/PyTables/issues/735
+https://sources.debian.org/src/pytables/3.6.1-5/debian/patches/0005-Skip-index-backcompat-tests-on-bingendian.patch/
+
+From: Antonio Valentino
+Date: Sat, 3 Aug 2019 16:22:13 +
+Subject: Skip index backcompat tests on bingendian
+
+Forwarded: not-needed
+--- a/tables/tests/test_index_backcompat.py
b/tables/tests/test_index_backcompat.py
+@@ -6,8 +6,10 @@ from tables.tests.common import verbose
+ from tables.tests.common import unittest, test_filename
+ from tables.tests.common import PyTablesTestCase as TestCase
+
++import sys
+
+ # Check indexes from PyTables version 2.0
++@unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian')
+ class IndexesTestCase(common.TestFileMixin, TestCase):
+
+ def setUp(self):
+@@ -145,11 +147,13 @@ class IndexesTestCase(common.TestFileMixin, TestCase):
+
+
+ # Check indexes from PyTables version 2.0
++@unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian')
+ class Indexes2_0TestCase(IndexesTestCase):
+ h5fname = test_filename("indexes_2_0.h5")
+
+
+ # Check indexes from PyTables version 2.1
++@unittest.skipIf(sys.byteorder != 'little', 'broken on big-endian')
+ class Indexes2_1TestCase(IndexesTestCase):
+ h5fname = test_filename("indexes_2_1.h5")
+
diff --git a/dev-python/pytables/pytables-3.6.1-r1.ebuild
b/dev-python/pytables/pytables-3.6.1-r1.ebuild
index b9fcf11be120..bcad8167a71a 100644
--- a/dev-python/pytables/pytables-3.6.1-r1.ebuild
+++ b/dev-python/pytables/pytables-3.6.1-r1.ebuild
@@ -49,6 +49,7 @@ DOCS=( RELEASE_NOTES.txt THANKS )
PATCHES=(
"${FILESDIR}"/${P}-numpy-float.patch
"${FILESDIR}"/${P}-py310.patch
+ "${FILESDIR}"/${PN}-3.6.1-big-endian-tests-skip-subset.patch
)
python_prepare_all() {
[gentoo-commits] repo/gentoo:master commit in: dev-python/pytables/, dev-python/pytables/files/
commit: 83308d078978f201c7848a90ee5a8435e6e0ab2a
Author: Michał Górny gentoo org>
AuthorDate: Sun Jun 20 17:37:10 2021 +
Commit: Michał Górny gentoo org>
CommitDate: Sun Jun 20 17:38:41 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=83308d07
dev-python/pytables: Fix test failures with recent numpy
Signed-off-by: Michał Górny gentoo.org>
.../files/pytables-3.6.1-numpy-float.patch | 176 +
dev-python/pytables/pytables-3.6.1.ebuild | 28 ++--
2 files changed, 193 insertions(+), 11 deletions(-)
diff --git a/dev-python/pytables/files/pytables-3.6.1-numpy-float.patch
b/dev-python/pytables/files/pytables-3.6.1-numpy-float.patch
new file mode 100644
index 000..71fa3b85dac
--- /dev/null
+++ b/dev-python/pytables/files/pytables-3.6.1-numpy-float.patch
@@ -0,0 +1,176 @@
+From d2a480d14f29fb1d2baee292bc6a2cca4817dcbd Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Zbigniew=20J=C4=99drzejewski-Szmek?=
+Date: Sun, 24 Jan 2021 16:36:21 +0100
+Subject: [PATCH] Use lowercase float/int as numpy dtype
+
+Float64 is gone with numpy 1.20, which causes doctests to fail
+(https://bugzilla.redhat.com/show_bug.cgi?id=1914335).
+
+Similarly all uses of Float32, Int32 should be replaced by float32 and int32.
+
+>>> numpy.__version__
+'1.19.4'
+>>> [k for k in numpy.sctypeDict.keys() if str(k).lower().startswith('float')]
+['float16', 'Float16', 'float32', 'Float32', 'float64', 'Float64', 'float128',
'Float128', 'float_', 'float']
+
+>>> numpy.__version__
+'1.20.0rc2'
+>>> [k for k in numpy.sctypeDict.keys() if str(k).lower().startswith('float')]
+['float16', 'float32', 'float64', 'float128', 'float_', 'float']
+---
+ bench/bsddb-table-bench.py | 10 +-
+ bench/postgres-search-bench.py | 4 ++--
+ bench/pytables-search-bench.py | 6 +++---
+ bench/recarray2-test.py| 2 +-
+ bench/shelve-bench.py | 10 +-
+ bench/sqlite-search-bench.py | 4 ++--
+ tables/atom.py | 2 +-
+ 7 files changed, 19 insertions(+), 19 deletions(-)
+
+diff --git a/bench/bsddb-table-bench.py b/bench/bsddb-table-bench.py
+index dd9f875b..a2e02361 100644
+--- a/bench/bsddb-table-bench.py
b/bench/bsddb-table-bench.py
+@@ -83,11 +83,11 @@ def createFile(filename, totalrows, recsize, verbose):
+ # Get the record object associated with the new table
+ if recsize == "big":
+ isrec = Big()
+-arr = np.array(np.arange(32), type=np.Float64)
+-arr2 = np.array(np.arange(32), type=np.Float64)
++arr = np.array(np.arange(32), type=np.float64)
++arr2 = np.array(np.arange(32), type=np.float64)
+ elif recsize == "medium":
+ isrec = Medium()
+-arr = np.array(np.arange(2), type=np.Float64)
++arr = np.array(np.arange(2), type=np.float64)
+ else:
+ isrec = Small()
+ # print d
+@@ -107,8 +107,8 @@ def createFile(filename, totalrows, recsize, verbose):
+ #d['TDCcount'] = i % 256
+ d['ADCcount'] = (i * 256) % (1 << 16)
+ if recsize == "big":
+-#d.float1 = np.array([i]*32, np.Float64)
+-#d.float2 = np.array([i**2]*32, np.Float64)
++#d.float1 = np.array([i]*32, np.float64)
++#d.float2 = np.array([i**2]*32, np.float64)
+ arr[0] = 1.1
+ d['float1'] = arr
+ arr2[0] = 2.2
+diff --git a/bench/postgres-search-bench.py b/bench/postgres-search-bench.py
+index d2c9f4f4..7fe83f6a 100644
+--- a/bench/postgres-search-bench.py
b/bench/postgres-search-bench.py
+@@ -15,11 +15,11 @@ def flatten(l):
+
+
+ def fill_arrays(start, stop):
+-col_i = numpy.arange(start, stop, type=numpy.Int32)
++col_i = numpy.arange(start, stop, type=numpy.int32)
+ if userandom:
+ col_j = numpy.random.uniform(0, nrows, size=[stop - start])
+ else:
+-col_j = numpy.array(col_i, type=numpy.Float64)
++col_j = numpy.array(col_i, type=numpy.float64)
+ return col_i, col_j
+
+ # Generator for ensure pytables benchmark compatibility
+diff --git a/bench/pytables-search-bench.py b/bench/pytables-search-bench.py
+index 726d30b1..6417186b 100644
+--- a/bench/pytables-search-bench.py
b/bench/pytables-search-bench.py
+@@ -37,11 +37,11 @@ def create_db(filename, nrows):
+ stop = (j + 1) * step
+ if stop > nrows:
+ stop = nrows
+-arr_f8 = np.arange(i, stop, type=np.Float64)
+-arr_i4 = np.arange(i, stop, type=np.Int32)
++arr_f8 = np.arange(i, stop, type=np.float64)
++arr_i4 = np.arange(i, stop, type=np.int32)
+ if userandom:
+ arr_f8 += np.random.normal(0, stop * scale, shape=[stop - i])
+-arr_i4 = np.array(arr_f8, type=np.Int32)
++arr_i4 = np.array(arr_f8, type=np.int32)
+ recarr = np.rec.fromarrays([arr_i4, arr_i4, arr_f8, arr_f8])
+ table.append(recarr)
+ j += 1
+diff
[gentoo-commits] repo/gentoo:master commit in: dev-python/pytables/, dev-python/pytables/files/
commit: 6891e6348ac3444b82d655d97c244d05ef122a8e
Author: Benda Xu gentoo org>
AuthorDate: Mon Dec 4 03:23:15 2017 +
Commit: Benda XU gentoo org>
CommitDate: Mon Dec 4 03:23:15 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6891e634
dev-python/pytables: drop old version.
Reported-by: Orivej Desh gmx.fr>
Suggested-by: Nick Wallingford wallingford.cc>
Bug: https://bugs.gentoo.org/590936
Package-Manager: Portage-2.3.16, Repoman-2.3.6
dev-python/pytables/Manifest | 3 +-
.../pytables/files/pytables-3.1.1-blosc.patch | 16 -
.../files/pytables-3.1.1-cython-backport.patch | 65 ---
.../files/pytables-3.1.1-numpy19-backport.patch| 51 ---
dev-python/pytables/pytables-3.1.1-r2.ebuild | 75 --
5 files changed, 1 insertion(+), 209 deletions(-)
diff --git a/dev-python/pytables/Manifest b/dev-python/pytables/Manifest
index e18340aad94..0e5ff0132fe 100644
--- a/dev-python/pytables/Manifest
+++ b/dev-python/pytables/Manifest
@@ -1,3 +1,2 @@
-DIST tables-3.1.1.tar.gz 6715786 SHA256
39b9036376f1185599771c19276f13b5b9119d98f9108f58595745ded3fe2da3 SHA512
b5b2052dd81c4748c5e26c1f61f9f92891f48335b0a553f7602ab11c9029dd673d27b91e24cac0da21a81df0c26dbcd9a438214fa58af1ae831c5f04dfa212a6
WHIRLPOOL
86fd6dc9e12503fdbd23013b75f33a41eadbbac0e6dd5ac9a91476d073195077fc6b3d5ad24b1dd4b4c18ae7ed8abc8ea1708262e52240f4c2c3b1153f8c9e91
DIST tables-3.3.0.tar.gz 7004337 SHA256
8383ccf02e041a5d55494a09fc5514140b4653055a2732c981b5fd0f7408822c SHA512
e19445f0f5f2530d49ce55f258931babb7b05df2366637ddbc306323a1f75b7f7dcf91d70a8cc1f41b182d4cdd9c83872873168592bdcce7bd5acae9f3274f36
WHIRLPOOL
f270f741d6886775cc730fbcb79de215fbbe2d9b7b2b6efc6b5b3fa7d141046e7c69daad140ad7cc533b439bfae801ea0e1567939dc4258e5c3b6a88f27cd86c
-DIST tables-3.4.2.tar.gz 7593471 SHA256
fdbbea4edb6bad0ac0e53fc7bc6970e78e12eef4944aa4146bcdcb573201676c SHA512
8c3bb9113e5082f8b44866b04728a04dae37fbd576c3259309fc305fd4cc0c4f74925557e74f6bd1bd1fc5150d8091648139c4c702e5ed9f53e0ace11c2ac58b
WHIRLPOOL
392e117a3ad372ee91a02ee66994f3c03e67b4ae7473f5761e13215ce33084fc3ac8e9e371ca9b59f374066523bcd3ebbced01c49faaa84d4af75a26811ee35f
+DIST tables-3.4.2.tar.gz 7593471 BLAKE2B
1a011a2a910a25d4e7cad68b5a1a267482f5ed958aa824dfba5a6c902200c56253c7d5609cd674dfcb288f6ebf2ecb76f4324e53b852f70d0cfc60d6b222510a
SHA512
8c3bb9113e5082f8b44866b04728a04dae37fbd576c3259309fc305fd4cc0c4f74925557e74f6bd1bd1fc5150d8091648139c4c702e5ed9f53e0ace11c2ac58b
diff --git a/dev-python/pytables/files/pytables-3.1.1-blosc.patch
b/dev-python/pytables/files/pytables-3.1.1-blosc.patch
deleted file mode 100644
index 3a4ba18e5e7..000
--- a/dev-python/pytables/files/pytables-3.1.1-blosc.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- setup.py | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/setup.py b/setup.py
-index 2c0c126..1448eb1 100755
a/setup.py
-+++ b/setup.py
-@@ -768,7 +768,7 @@ if 'BLOSC' not in optional_libs:
- print("Setting compiler flag '-msse2'")
- CFLAGS.append("-msse2")
- else:
--ADDLIBS += ['blosc']
-+ADDLIBS += ['blosc', 'blosc_filter']
-
-
- utilsExtension_libs = LIBS + ADDLIBS
diff --git a/dev-python/pytables/files/pytables-3.1.1-cython-backport.patch
b/dev-python/pytables/files/pytables-3.1.1-cython-backport.patch
deleted file mode 100644
index 7db41d2e1a6..000
--- a/dev-python/pytables/files/pytables-3.1.1-cython-backport.patch
+++ /dev/null
@@ -1,65 +0,0 @@
- setup.py | 13 +++--
- tables/req_versions.py | 2 +-
- 2 files changed, 8 insertions(+), 7 deletions(-)
-
-diff --git a/setup.py b/setup.py
-index 0f2f3f7..52cda49 100755
a/setup.py
-+++ b/setup.py
-@@ -25,6 +25,7 @@ from distutils.core import Extension
- from distutils.dep_util import newer
- from distutils.util import convert_path
- from distutils.ccompiler import new_compiler
-+from distutils.version import LooseVersion
-
- cmdclass = {}
- setuptools_kwargs = {}
-@@ -106,7 +107,7 @@ def check_import(pkgname, pkgver):
- "You need %(pkgname)s %(pkgver)s or greater to run PyTables!"
- % {'pkgname': pkgname, 'pkgver': pkgver})
- else:
--if mod.__version__ < pkgver:
-+if mod.__version__ < LooseVersion(pkgver):
- exit_with_error(
- "You need %(pkgname)s %(pkgver)s or greater to run PyTables!"
- % {'pkgname': pkgname, 'pkgver': pkgver})
-@@ -122,21 +123,21 @@ if not has_setuptools:
-
- # Check if Cython is installed or not (requisite)
- try:
-+from Cython import __version__ as cython_version
- from Cython.Distutils import build_ext
--from Cython.Compiler.Main import Version
- cmdclass['build_ext'] = build_ext
- except ImportError:
- exit_with_error(
- "You need %(pkgname)s %(pkgver)s or greater to compile PyTables!"
- % {'pkgname': 'Cython', 'pkgver':
