Dear Friends,
I simulated the 4 peptide in water box .
As they come close to each other they start to from anti-parallel
beta sheet structure.
Now I want to draw the Free energy surface for the
same ..How is there pot energy ???
Would you please tell me how to do it ..
( I read about
On 4/4/13 2:14 AM, rama david wrote:
Dear Friends,
I simulated the 4 peptide in water box .
As they come close to each other they start to from anti-parallel
beta sheet structure.
Now I want to draw the Free energy surface for the
same ..How is there pot energy ???
Would you please
Thank you justin,
I read the articles, archive and also g_sham -h,
As I mentioned in previous mail, I simulated four random coil peptide ,
they started to form
Beta sheet structure after 20 ns ..( simulation time 100ns )
My interest is how to draw the Free energy diagram for Potential energy
On 4/4/13 5:50 AM, rama david wrote:
Thank you justin,
I read the articles, archive and also g_sham -h,
As I mentioned in previous mail, I simulated four random coil peptide ,
they started to form
Beta sheet structure after 20 ns ..( simulation time 100ns )
My interest is how to draw the
Thank you a lot justin for offering me help.
I am interested to use g_sham ..( And if the other command give me my
output, I am also interested to know the other way )
I was confuse with the input that I have to give with g_sham.
I proceed the following command
g_energy is used to get
On 4/4/13 9:37 AM, rama david wrote:
Thank you a lot justin for offering me help.
I am interested to use g_sham ..( And if the other command give me my
output, I am also interested to know the other way )
I was confuse with the input that I have to give with g_sham.
I proceed the following
Dear Justin,
Thank you a lot for help and kind passion to listen me.
I finally come with the my desired out put.
I
I am grateful to you for help.
With Best Wishes,
Rama david
On Thu, Apr 4, 2013 at 7:09 PM, Justin Lemkul jalem...@vt.edu wrote:
On 4/4/13 9:37 AM, rama david wrote:
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