Re: [gpc-informatics] #360: how to aggregate BMI, medications and the like for breast cancer analysis?

[GPC Informatics]

#360: how to aggregate BMI, medications and the like for breast cancer analysis?
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 Reporter:  dconnolly |   Owner:  tmeyer
 Type:  design-issue  |  Status:  closed
 Priority:  major |   Milestone:  cohort-char-bc-db
Component:  methods-core  |  Resolution:  fixed
 Keywords:|  Blocked By:
 Blocking:  328, 382  |
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Changes (by dconnolly):

 * status:  assigned => closed
 * resolution:   => fixed


Comment:

 Tim is all set.

 ref ticket:297#comment:41

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Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
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Re: [gpc-informatics] #360: how to aggregate BMI, medications and the like for breast cancer analysis?

[GPC Informatics]

#360: how to aggregate BMI, medications and the like for breast cancer analysis?
--+
 Reporter:  dconnolly |   Owner:  tmeyer
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cohort-char-bc-db
Component:  methods-core  |  Resolution:
 Keywords:|  Blocked By:
 Blocking:  328, 382  |
--+
Changes (by dconnolly):

 * cc: gpc-dev@… (added)
 * owner:  brad_mcdowell => tmeyer
 * status:  reopened => assigned


Comment:

 The relevant RxCUIs are the direct  children of the VA classes that
 descend from either of these:
   - [AN000] ANTINEOPLASTICS
   - [HS000] HORMONES/SYNTHETICS/MODIFIERS

 They're maintained in the form of REDCap pulldown choices in
 [https://github.com/kumc-
 bmi/bc_qa/blob/rc_codebook/bc2_collect/rx_choices.txt rx_choices.txt]. I
 built this file when I discovered KUMC's drug ontology isn't complete; it
 now has UNMC's drugs as well. You're welcome to propose edits in the
 normal git/github ways or just email me suggested edits. Then I can paste
 them into REDCap.

 They're sorted by class code and then drug name. The first few lines are:

 {{{
 377179, [AN100] RXCUI:377179 Busulfan Injectable Solution
 371165, [AN100] RXCUI:371165 Busulfan Oral Tablet
 378774, [AN100] RXCUI:378774 Carmustine Drug Implant
 }}}

 The label pattern is `[{vc}] RXCUI:{cui} {drug}`.
 from [https://github.com/kumc-
 bmi/bc_qa/blob/rc_codebook/bc2_collect/bc2_dd.py#L282 bc2_dd.py#L282]

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Ticket URL: 

gpc-informatics 
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