Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  lv
 Type:  design-issue  |  Status:  closed
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:  fixed
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---
Changes (by dconnolly):

 * status:  assigned => closed
 * resolution:   => fixed


Comment:

 In today's DRN OC update:

  - [https://pcornet.imeetcentral.com/drnoc-workgroups/folder/8055231/ DC
 v3.02]

 supplementary:

  - [https://pcornet.imeetcentral.com/drnoc-workgroups/doc/48336560/
 Implementation Guidance]
- [https://pcornet.imeetcentral.com/drnoc-workgroups/folder/8209866/
 2016-11-07_DRN OC Forum_Data Characterization Cycle 2 and Implementation
 Guidance]

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  lv
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---

Comment (by lv):

 MCRF is not a beta site for this round.

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  lv
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---
Changes (by dconnolly):

 * owner:  mprittie => lv


Comment:

 The beta testing went well at KUMC.

 The issues in our data that it turned up (aside from some minor nits in
 the EDC code) were:

  - Data check **1.06** shows RX_BASIS values as outside of specifications.
  - Missing HT, WT, and BMI are from error in local CDM transform (issue
 with local CDM ETL).
  - High percentage of missing DISCHARGE_DATES and DISCHARGE_DISPOSITIONS
 in the ENROLLMENT table (investigating).


 Was there another GPC beta site? MCRF?

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  mprittie
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---

Comment (by mprittie):

 Replying to [comment:5 dconnolly]:

 Correct, we (KUMC) received the beta SAS code last week since we are one
 of the beta sites.  From what I can tell the DR NOC did not make the Cycle
 2 beta code available on central desktop though, and I don't imagine they
 plan to until they release the DC2 to folks on Nov 7.

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  mprittie
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---

Comment (by dconnolly):

 Mike,

 We got the SAS code, right? Do you know if it was shared via PCORnet
 central desktop? If so, add a pointer and close this?

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  mprittie
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---

Comment (by mprittie):

 Here are my notes from the DRN OC call this morning...

 == DRN OC Forum Call (9/19)
 Implementation Guidance: more formal process needed
   - Package into "releases"

 **DC Cycle 2
   - Short timeline may not leave time for ETL changes
   - Nov 2016-~April 2017
   - Quarterly updates, twice per cycle
   - Additional refreshes may be needed for particular studies
   - Prescribing, Dispensing, Lab, death
   - 1 monolithic package (not DQ, DCQ, EDC)
   - Annotated Data Dict moving to REDCap
   - 20 data checks (retired 5, added 8, refined 2)
 - Orphan PATID, replication error, <50% of encs have diags, <50% of
 encs have procs
   - Moving to 1-step approval (no more PTR)
   - Moving from individual discussion to discussion forums
   - Be prepared to refresh after discussion forum

 **Timeline
   - Oct 3 - Oct 17: Final round of beta testing (1 DM per CDRN)
   - Oct: Revisions priorities and incorporated if feasible
   - Nov 7: Everything released: Release Query Package v3.02, Data Checks
 v2, and implementation guidance
   - Before Dec 16 (6 weeks): Initial responses due
   - Dec / Jan: DM approvals and analysis of results
   - Jan / Feb: Discussion forum
   - March: Second response due

 Cycle 2 data characterization materials and feedback survey available at
 https://pconet.imeetcentral.com/p/aQAC1YDd

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  mprittie
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---

Comment (by dconnolly):

 Jim !McClay points out:

  - [https://pcornet.imeetcentral.com/drnoc-workgroups/doc/47546587/ Open
 Comment Period (9/19-9/30)] about Data Characterization Cycle 2.

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  mprittie
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---
Changes (by dconnolly):

 * owner:  dconnolly => mprittie
 * status:  new => assigned


Comment:

 Mike, did you say KUMC is part of some beta program?

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization (was: spesc (SAS code) for Cycle 2 of PCORnet Data Characterization)

[GPC Informatics]

#530: specs (SAS code) for Cycle 2 of PCORnet Data Characterization
--+---
 Reporter:  dconnolly |   Owner:  dconnolly
 Type:  design-issue  |  Status:  new
 Priority:  major |   Milestone:  cdm-refresh6
Component:  data-stds |  Resolution:
 Keywords:  CDM   |  Blocked By:
 Blocking:|
--+---
Changes (by dconnolly):

 * cc: bzschoche, gpc-dev@… (added)
 * type:  task => design-issue


Comment:

 Allison Haufler writes to DRNOCforum August 23, 2016 8:06 AM:

 > Please join us for our September DRN OC Forum on September 19th at 10-11
 am ET.
 > We will present information on the next cycle (Cycle 2) of PCORnet Data
 Characterization. Please forward this invite to any interested colleagues.
 >
 > DRN OC September Forum
 > Monday, September 19, 2016
 > 10:00 am  |  Eastern Daylight Time (New York, GMT-04:00)  |  1 hr
 >
 > Meeting number (access code): 732 075 886
 > Meeting link:
 https://dukemed.webex.com/dukemed/j.php?MTID=mba894b3db66b1b1e6eae7bd697978d6a
 > Join by phone
 > 1-855-244-8681 Call-in toll-free number (US/Canada)
 > 1-650-479-3207 Call-in toll number (US/Canada)

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev