Re: [gmx-users] RMSD command line doubt

2019-04-29 Thread Justin Lemkul
On 4/28/19 9:53 PM, Neena Susan Eappen wrote: Hello gromacs users, My goal is to calculate all-atom rmsd of every structure in the trajectory(.trr) to the final structure after simulation (.gro). Q1) So, I don't understand the purpose of giving .tpr input file (which was the input

[gmx-users] RMSD command line doubt

2019-04-28 Thread Neena Susan Eappen
Hello gromacs users, My goal is to calculate all-atom rmsd of every structure in the trajectory(.trr) to the final structure after simulation (.gro). Q1) So, I don't understand the purpose of giving .tpr input file (which was the input structure file before production mdrun) as a structure