The pdb file is in Angstroms. Gromacs uses nanometers, thus the decrease by a
factor of 10 -> 1nm = 10A
Peter
-Original Message-
From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se
[mailto:gromacs.org_gmx-users-boun...@maillist.sys.kth.se] On Behalf Of Anna
Lohning
Sent: Friday,
Hi
I've looked all through the GROMACS documentation re actions of the PDB2GMX
command but I cant' see a reference to why it appears to change the coordinates
of the input .pdb file (basically decreasing them by an order of magnitude). Is
this normal? When grepping out your docked ligands this
