Hi,
Start with
http://manual.gromacs.org/documentation/5.1/onlinehelp/gmx-do_dssp.html
Mark
On Tue, Feb 27, 2018 at 1:00 PM Neha Gupta wrote:
> Hi,
>
> I use gromacs version 5.1.4 through cygwin
>
> Please let me know how to install DSSP?
>
> Which version of DSSP would be compatible with the
Hi,
I use gromacs version 5.1.4 through cygwin
Please let me know how to install DSSP?
Which version of DSSP would be compatible with the above version of gromacs?
Thanks,
Neha
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Dear Soumadwip,
This is not a problem with do_dssp, but with your deep installation. My guess
is that you have not completed the installation of dssp.
Kind regards,
Erik
__
Erik Marklund, PhD
Marie Skłodowska Curie INCA Fellow
Department of Chemistry – BMC
Uppsala Uni
Hi
follow these steps:
1)sudo wget ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.2.1-linux-i386 -O
/usr/local/bin/dssp
2)sudo chmod a+x /usr/local/bin/dssp
3)export DSSP=/usr/local/bin/dssp
On Fri, Feb 3, 2017 at 3:15 PM, Mark Abraham
wrote:
> Hi,
>
> On Fri, Feb 3, 2017 at 7:52 AM soumadwip
Hi,
On Fri, Feb 3, 2017 at 7:52 AM soumadwip ghosh
wrote:
> Hello all,
>
> I am trying to install dssp in centos 7 for determining the secondary
> structure of a protein in combination with do_dssp. These are the steps I
> followed:
>
> 1. installation directory : /opt/apps/dssp/dssp-2.2.1/
>
>
Hello all,
I am trying to install dssp in centos 7 for determining the secondary
structure of a protein in combination with do_dssp. These are the steps I
followed:
1. installation directory : /opt/apps/dssp/dssp-2.2.1/
2. but there is no dssp executable in the dssp-2.2.1 directory
3. however t
