Re: [gmx-users] gmx select and gmx trjconv or gmx density

Thank you Dr. Abraham! I think I will write a script to do the analysis then. Best Regards, Dan On Mon, Apr 9, 2018 at 12:57 PM, Mark Abraham wrote: > Hi, > > Unfortunately not all tools support dynamic selection groups yet, so the > only useful way to use that index file is by matching it wi

Re: [gmx-users] gmx select and gmx trjconv or gmx density

Hi, Unfortunately not all tools support dynamic selection groups yet, so the only useful way to use that index file is by matching it with the correct single frame from the trajectory, which you might get from e.g. gmx trjconv split Mark On Fri, Apr 6, 2018, 21:37 Dan Gil wrote: > Hi, > > I am

[gmx-users] gmx select and gmx trjconv or gmx density

Hi, I am trying to select particles that are z < 20 and z > 10 as a function of time. I think I used gmx select correctly and generated an index file with group names like "(z_<_.8_f2882_t23056.000)" Now I am unsure how I use this index file for gmx trjconv or gmx density. Does anybody have some