Re: [gmx-users] Simulation of membrane associated protein

Thank you! *Olga Press-Sandler* Ph.D. student, Yifat Miller's lab Department of Chemistry Ben-Gurion University, Israel -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read

Re: [gmx-users] Simulation of membrane associated protein

On 10/4/19 4:52 AM, Olga Press wrote: Prof. Lemkul thank you for your response. I'm using the output file from the charmm gui site after the MD production, which contain an equilibrated DOPC bilayer with TIP3 molecules as the solvent (and I remove the ions before the solvation). I used the

Re: [gmx-users] Simulation of membrane associated protein

Prof. Lemkul thank you for your response. I'm using the output file from the charmm gui site after the MD production, which contain an equilibrated DOPC bilayer with TIP3 molecules as the solvent (and I remove the ions before the solvation). I used the second option of the gmx_solvate (solvate a

Re: [gmx-users] Simulation of membrane associated protein

On 10/2/19 10:58 AM, Olga Press wrote: Dear all, I am working on DOPC-associated protein and try to orient the protein on the DOPC surface by using the gmx_solvate as previously suggested by Prof. Justin Lemkul at the following like http://www.mdtutorials.com/gmx/biphasic/03_tricks.html