Re: [gmx-users] gromacs energy minimization fatal error: Invalid bond type 1000 in constant-PH MD

2016-05-26 Thread Mark Abraham
; about it.I would spend more time on it. > > > > Now,would you please offer me some advice on solve my problem above? > > > > Tao Wang > > > > Thank You! > > > > > > Message: 2 > > Date: Wed, 25 May 2016 07:04:59 -0400 > > From: Justin Lemk

Re: [gmx-users] gromacs energy minimization fatal error: Invalid bond type 1000 in constant-PH MD

2016-05-25 Thread Justin Lemkul
lem above? Tao Wang Thank You! Message: 2 Date: Wed, 25 May 2016 07:04:59 -0400 From: Justin Lemkul <jalem...@vt.edu> To: gmx-us...@gromacs.org Subject: Re: [gmx-users] gromacs energy minimization fatal error: Invalid bond type 1000 in constant-PH MD Message-ID: <fe760a05-25

Re: [gmx-users] gromacs energy minimization fatal error: Invalid bond type 1000 in constant-PH MD

2016-05-25 Thread Justin Lemkul
On 5/25/16 6:06 AM, Wang Tao wrote: Hi,every one! I'm using opls aa in gromacs to conduct constant-PH MD. In my system,PH is equal to 13.There are three kind of groups, NA+,OH- and H2O. The itp file for OH- is created by myself. This is not what constant pH MD is. You've got a fixed