Re: [gmx-users] GROMACS 2020.1 failed to pass make check
Hi Paul, Thank you so much for your reply! That is very helpful. Best, Wei-Tse On Mon, Apr 6, 2020 at 1:23 AM Paul bauer wrote: > Hello, > > you are using a plumed modified version that adds extra options to mdrun. > Our unit tests check that the output from mdrun -h stays invariant, and > this is no longer the case once you modify the code for plumed. > > You can ignore this failure in this case, but please mention in the > future if you are using modified versions of the code. > > Cheers > > Paul > > On 05/04/2020 21:23, Wei-Tse Hsu wrote: > > Dear gmx users, > > Recently I've been trying to install GROMACS 20201. After successfully > > compilng GROMACS 2020.1, when executing make check command, I > > encountered the following error. Specifically, one out of 56 tests > failed, > > which was related to Mdrun Test.WritesHelp. Looking at the error message, > > I'm still not sure what it means and how I should solve this problem. I > > wonder if anyone had this before that could give me some insights about > how > > I could solve the problem. Any help would be appreciated! > > > > Here is the error message in the middle. > > > > > > > > > > > > *[--] 1 test from MdrunTest[ RUN ] > > > MdrunTest.WritesHelp/home/wei-tse/Documents/Software/GROMACS/gromacs-2020.1/src/testutils/refdata.cpp:867: > > Failure In item: /Help string Actual: 'SYNOPSIS* > > And here is the error message in the end. > > > > > > > > > > > > *The following tests FAILED: 43 - MdrunTests > > (Failed)CMakeFiles/run-ctest-nophys.dir/build.make:57: recipe for target > > 'CMakeFiles/run-ctest-nophys' failedCMakeFiles/Makefile2:1467: recipe for > > target 'CMakeFiles/run-ctest-nophys.dir/all' > > failedCMakeFiles/Makefile2:445: recipe for target > > 'CMakeFiles/check.dir/rule' failedMakefile:327: recipe for target 'check' > > failed* > > > > And here is the whole STDOUT message of the command printed by make > *check > >> make_check.log*. > > > https://drive.google.com/file/d/1Nb2BLzA2Vl_cjS1b_M_HNk0wkrfR2WKt/view?usp=sharing > > > > Best, > > Wei-Tse > > > -- > Paul Bauer, PhD > GROMACS Development Manager > KTH Stockholm, SciLifeLab > 0046737308594 > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
Re: [gmx-users] GROMACS 2020.1 failed to pass make check
Hello, you are using a plumed modified version that adds extra options to mdrun. Our unit tests check that the output from mdrun -h stays invariant, and this is no longer the case once you modify the code for plumed. You can ignore this failure in this case, but please mention in the future if you are using modified versions of the code. Cheers Paul On 05/04/2020 21:23, Wei-Tse Hsu wrote: Dear gmx users, Recently I've been trying to install GROMACS 20201. After successfully compilng GROMACS 2020.1, when executing make check command, I encountered the following error. Specifically, one out of 56 tests failed, which was related to Mdrun Test.WritesHelp. Looking at the error message, I'm still not sure what it means and how I should solve this problem. I wonder if anyone had this before that could give me some insights about how I could solve the problem. Any help would be appreciated! Here is the error message in the middle. *[--] 1 test from MdrunTest[ RUN ] MdrunTest.WritesHelp/home/wei-tse/Documents/Software/GROMACS/gromacs-2020.1/src/testutils/refdata.cpp:867: Failure In item: /Help string Actual: 'SYNOPSIS* And here is the error message in the end. *The following tests FAILED: 43 - MdrunTests (Failed)CMakeFiles/run-ctest-nophys.dir/build.make:57: recipe for target 'CMakeFiles/run-ctest-nophys' failedCMakeFiles/Makefile2:1467: recipe for target 'CMakeFiles/run-ctest-nophys.dir/all' failedCMakeFiles/Makefile2:445: recipe for target 'CMakeFiles/check.dir/rule' failedMakefile:327: recipe for target 'check' failed* And here is the whole STDOUT message of the command printed by make *check make_check.log*. https://drive.google.com/file/d/1Nb2BLzA2Vl_cjS1b_M_HNk0wkrfR2WKt/view?usp=sharing Best, Wei-Tse -- Paul Bauer, PhD GROMACS Development Manager KTH Stockholm, SciLifeLab 0046737308594 -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
[gmx-users] GROMACS 2020.1 failed to pass make check
Dear gmx users, Recently I've been trying to install GROMACS 20201. After successfully compilng GROMACS 2020.1, when executing make check command, I encountered the following error. Specifically, one out of 56 tests failed, which was related to Mdrun Test.WritesHelp. Looking at the error message, I'm still not sure what it means and how I should solve this problem. I wonder if anyone had this before that could give me some insights about how I could solve the problem. Any help would be appreciated! Here is the error message in the middle. *[--] 1 test from MdrunTest[ RUN ] MdrunTest.WritesHelp/home/wei-tse/Documents/Software/GROMACS/gromacs-2020.1/src/testutils/refdata.cpp:867: Failure In item: /Help string Actual: 'SYNOPSIS* And here is the error message in the end. *The following tests FAILED: 43 - MdrunTests (Failed)CMakeFiles/run-ctest-nophys.dir/build.make:57: recipe for target 'CMakeFiles/run-ctest-nophys' failedCMakeFiles/Makefile2:1467: recipe for target 'CMakeFiles/run-ctest-nophys.dir/all' failedCMakeFiles/Makefile2:445: recipe for target 'CMakeFiles/check.dir/rule' failedMakefile:327: recipe for target 'check' failed* And here is the whole STDOUT message of the command printed by make *check > make_check.log*. https://drive.google.com/file/d/1Nb2BLzA2Vl_cjS1b_M_HNk0wkrfR2WKt/view?usp=sharing Best, Wei-Tse -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
