Re: [gmx-users] How are the clusters of particles created?

Hi, Gridding the particles in x and y, and then binning in z. See Fig 2 and text of http://www.sciencedirect.com/science/article/pii/S0010465513001975 Mark On Fri, Sep 19, 2014 at 4:54 AM, Theodore Si sjyz...@gmail.com wrote: Hi all, In the page 34 of the manual: The Verlet cut-off scheme

[gmx-users] How are the clusters of particles created?

Hi all, In the page 34 of the manual: The Verlet cut-off scheme is implemented in a very efficient fashion based on clusters of particles. The simplest example is a cluster size of 4 particles. The pair list is then constructed based on cluster pairs. I want to know on what condition will 4